Browse Element(s) Details


Os.26486.1.S1_at

Description gb:AK120227.1
DB_XREF= gi:37989850
TID=Os.26486.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042K03, full insert sequence.
FL= gb:AK120227.1 gb:AK060786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2585011/11Gl1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed
LOC_Os09g25860OsAffx.20969.1.S1_at1/119+15497414..15505057expressed protein
LOC_Os09g25870Os.14919.1.S1_at3/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870OsAffx.29313.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870Os.56216.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25880Os.50448.1.S1_at11/119+15520969..15522889expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0009924molecular_functionoctadecanal decarbonylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26486.1.S1_at--990--9451Chr09:15495850..15495972 (25 bp)
TCGGCGCCTGCGAGTACTCGCTGGA
LOC_Os09g25850
Os.26486.1.S1_at--1150--3871Chr09:15496110..15496134 (25 bp)
CTGTCTGATCGGAACCCGCGCCGTT
LOC_Os09g25850
Os.26486.1.S1_at--319--7211Chr09:15496276..15496300 (25 bp)
GTCGTCATGGTCATCGATCACCATC
LOC_Os09g25850
Os.26486.1.S1_at--295--7811Chr09:15496284..15496308 (25 bp)
GGTCATCGATCACCATCAAATTAAA
LOC_Os09g25850
Os.26486.1.S1_at--931--131Chr09:15496303..15496327 (25 bp)
ATTAAATCATTCTCGTGTGGCTCCT
LOC_Os09g25850
Os.26486.1.S1_at--1092--8651Chr09:15496318..15496342 (25 bp)
TGTGGCTCCTGACTGTTCAATTTGC
LOC_Os09g25850
Os.26486.1.S1_at--371--8951Chr09:15496327..15496351 (25 bp)
TGACTGTTCAATTTGCTGCCACACC
LOC_Os09g25850
Os.26486.1.S1_at--956--4191Chr09:15496365..15496389 (25 bp)
CCCGCACCGTGTTTTGATTTGTCTG
LOC_Os09g25850
Os.26486.1.S1_at--766--10771Chr09:15496378..15496402 (25 bp)
TTGATTTGTCTGCACGTATATGTAT
LOC_Os09g25850
Os.26486.1.S1_at--411--331Chr09:15496411..15496435 (25 bp)
ATACTTTGATTTGGCGTTGGATACA
LOC_Os09g25850
Os.26486.1.S1_at--1116--6291Chr09:15496442..15496466 (25 bp)
GATGAGCTGTATGAACGTGTAGATA
LOC_Os09g25850
Target Sequence 
TCGGCGCCTGCGAGTACTCGCTGGAGCGCGGGGTGGTGCACGCGTGCCACGCCGGAGGCGTGGTGCACTTCCTGGAGGGG
TACACGCACCACGAGGTGGGCGCCATCGACGTGGACCGCATCGACGTCGTGTGGGAGGCGGCGCTCAGGCACGGCCTCCG
GCCTGTCTGATCGGAACCCGCGCCGTTCGTCTCGTCGATCCAACGGCCGCGGCGCGTTCTGGGCCCCCACCAAACCGGGC
CCAAGCCCTCGTCGTCGTCGTCATCGTCGTCGTTCTTCTCTTTCTCCTTTCCCTTTTNCACAGGTTAATTTAAAAACGTC
GTCGTCGTCGTCGTCATGGTCATCGATCACCATCAAATTAAATCATTCTCGTGTGGCTCCTGACTGTTCAATTTGCTGCC
ACACCGGCAAATCCTCCCCCCGCACCGTGTTTTGATTTGTCTGCACGTATATGTATAAGTATATATACTTTGATTTGGCG
TTGGATACATAAAGAGATGAGCTGTATGAACGTGTAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis