Browse Element(s) Details


OsAffx.20969.1.S1_at

Description gb:XM_354144.1
DB_XREF= gi:35189721
GEN=OSJNBa0031C24.32
TID=OsAffx.20969.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g258601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed
LOC_Os09g25860OsAffx.20969.1.S1_at1/119+15497414..15505057expressed protein
LOC_Os09g25870Os.14919.1.S1_at3/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870OsAffx.29313.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25870Os.56216.1.S1_at1/119+15512799..15518177transposon protein, putative, Mutator sub-class
LOC_Os09g25880Os.50448.1.S1_at11/119+15520969..15522889expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20969.1.S1_at--833--101712Chr08:10384285..10384307 (23 bp)
TATAATTCACCAACTACACTCCTGT
NONE
OsAffx.20969.1.S1_at--729--9251Chr07:6603936..6603960 (25 bp)
TCCTGTACAATCCTCATTCATCAAA
NONE
OsAffx.20969.1.S1_at--305--5251Chr07:6603899..6603923 (25 bp)
GAATCATCGAATCCAACGGCTCGAG
NONE
OsAffx.20969.1.S1_at--736--2571Chr07:6603885..6603909 (25 bp)
AACGGCTCGAGATTGTCCCACGTCT
NONE
OsAffx.20969.1.S1_at--625--8371Chr07:6603732..6603756 (25 bp)
GGCGTCAATCATCTGCGACTCCGCG
NONE
OsAffx.20969.1.S1_at--173--4671Chr07:6603710..6603734 (25 bp)
GCGTGACCGCCTATGATCCAGGCAA
NONE
OsAffx.20969.1.S1_at--967--8831Chr07:6603697..6603721 (25 bp)
TGATCCAGGCAACGGAGATCCTCCT
NONE
OsAffx.20969.1.S1_at--125--5751Chr07:6603656..6603680 (25 bp)
GACGGCTGATACACTGCGGTCCGCG
NONE
OsAffx.20969.1.S1_at--325--8852Chr04:10006257..10006281 (25 bp)
TGATCCTGCACGCTTGTACGAATGA
NONE
OsAffx.20969.1.S1_at--819--8751Chr07:6603567..6603591 (25 bp)
TGTACGAATGACTTCACAGCTAGAA
NONE
OsAffx.20969.1.S1_at--743--4831Chr07:6603549..6603573 (25 bp)
GCTAGAATGACTGACGACCACGTCC
NONE
Target Sequence 
TATAATTCACCAACTACACTCCTGTACAATCCTCATTCATCAAATCCGACGATCCAGAATCATCGAATCCAACGGCTCGA
GATTGTCCCACGTCTCCCCTCCGTATGCACCCCTCTCCCCTCTCTCTCTCTCTCTCTCTTGCACACCCTCCTCTCGGTCG
CTCCCCTCAACCATAGCCGCCTCCTCGATCCATGCCGCCGCCGCCTCGAGCCACGCCACCGCCGGCGTCAATCATCTGCG
ACTCCGCGTGACCGCCTATGATCCAGGCAACGGAGATCCTCCTCGGCTCCTCGCGCCCCGACGGCTGATACACTGCGGTC
CGCGCGTCAGGCGAAGTTGGGAGAGGATATCCTCTGAGGGGACATTGGCGGCGGTGATCCTGCACGCTTGTACGAATGAC
TTCACAGCTAGAATGACTGACGACCACGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis