Browse Element(s) Details


OsAffx.30022.1.S1_at

Description tigr:9637.m02240
TID=OsAffx.30022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2583011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed
LOC_Os09g25860OsAffx.20969.1.S1_at1/119+15497414..15505057expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30022.1.S1_at--88--9331Chr09:15480587..15480611 (25 bp)
TCCCATTTCTCTTTGTCTTCATCTA
LOC_Os09g25830
OsAffx.30022.1.S1_at--1123--10811Chr09:15480575..15480599 (25 bp)
TTGTCTTCATCTACAGGCTGCGGCG
LOC_Os09g25830
OsAffx.30022.1.S1_at--1067--8371Chr09:15480221..15480242 (22 bp)
GGCGACACTGGAGGAGTTTCTTGCT
LOC_Os09g25830
OsAffx.30022.1.S1_at--349--1214Chr10:10100463..10100483 (21 bp)
AGTTTCTTGCTTGCTGGGTCAAAGC
NONE
OsAffx.30022.1.S1_at--676--2971Chr09:15480155..15480179 (25 bp)
AATGACGACAGGATTCTTTTGAGAA
LOC_Os09g25830
OsAffx.30022.1.S1_at--386--10391Chr09:15480139..15480163 (25 bp)
TTTTGAGAATAAGCGGCATCGGCCT
LOC_Os09g25830
OsAffx.30022.1.S1_at--901--612Chr05:1126120..1126141 (22 bp)
ATGCGGCGGCGGTATGAATCCGTCC
NONE
OsAffx.30022.1.S1_at--975--3031Chr09:15480095..15480119 (25 bp)
AATCCGTCCGACGAGAGCGTGCAGG
LOC_Os09g25830
OsAffx.30022.1.S1_at--192--5911Chr09:15480047..15480071 (25 bp)
GAGCTCAAGGGCGTCATACTCTGGG
LOC_Os09g25830
OsAffx.30022.1.S1_at--312--7131Chr09:15480035..15480059 (25 bp)
GTCATACTCTGGGATGGCGCATCAC
LOC_Os09g25830
OsAffx.30022.1.S1_at--586--8631Chr09:15480026..15480050 (25 bp)
TGGGATGGCGCATCACCCGATGAGC
LOC_Os09g25830
Target Sequence 
TCCCATTTCTCTTTGTCTTCATCTACAGGCTGCGGCGGGCCCGAGCGGCCGCGGCGAGCGGAAGGGGAGGCGGCGACCCG
GCGGCGGCGACACTGGAGGAGTTTCTTGCTTGCTGGGTCAAAGCAAAAAGAAGAAGGCTAGGAATGCCATTAATGACGAC
AGGATTCTTTTGAGAATAAGCGGCATCGGCCTGGCATGCGGCGGCGGTATGAATCCGTCCGACGAGAGCGTGCAGGTGGA
GCGCGTCGTGGTGGGCGAGGAGCTCAAGGGCGTCATACTCTGGGATGGCGCATCACCCGATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis