Browse Element(s) Details


OsAffx.17897.1.S1_at

Description tigr:9637.m02239
TID=OsAffx.17897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g258209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17897.1.S1_at--293--1771Chr09:15470220..15470244 (25 bp)
ACGGTTGCTTTTGCCCTGGCGAATA
LOC_Os09g25820
OsAffx.17897.1.S1_at--20--4271Chr09:15470206..15470230 (25 bp)
CCTGGCGAATAACTCCTGGGTCTCT
LOC_Os09g25820
OsAffx.17897.1.S1_at--804--211Chr09:15470133..15470157 (25 bp)
ATTTGGGATGTGGTGCTTCACGTAC
LOC_Os09g25820
OsAffx.17897.1.S1_at--170--7811Chr09:15470095..15470119 (25 bp)
GGTCGAAGATCGTCTCATTTGGCGA
LOC_Os09g25820
OsAffx.17897.1.S1_at--1016--211Chr09:15470079..15470103 (25 bp)
ATTTGGCGATGGACGTCAGACCAGT
LOC_Os09g25820
OsAffx.17897.1.S1_at--35--1371Chr09:15470062..15470086 (25 bp)
AGACCAGTGCTACTCAACGCGTTCG
LOC_Os09g25820
OsAffx.17897.1.S1_at--999--1811Chr09:15470046..15470070 (25 bp)
ACGCGTTCGGCGTACTAGGCATTCT
LOC_Os09g25820
OsAffx.17897.1.S1_at--164--3891Chr09:15470004..15470023 (20 bp)
CTGTGTTGATCTTCTCTGGTTCTTC
LOC_Os09g25820
OsAffx.17897.1.S1_at--934--4711Chr09:15469922..15469946 (25 bp)
GCTGGACGGTTGATCTCCTTCAGAA
LOC_Os09g25820
OsAffx.17897.1.S1_at--992--9491Chr09:15469871..15469933 (25 bp)
TCTCCTTCAGAAGTGTGGATCTTGA
NONE
OsAffx.17897.1.S1_at--668--5651Chr09:15469808..15469832 (25 bp)
GACAGGTCTGGTTCCGGGTGTTATC
NONE
Target Sequence 
ACGGTTGCTTTTGCCCTGGCGAATAACTCCTGGGTCTCTGACATCCGCGGTGTCCTCACTGTTCCGGTCATCTCCCAGTT
TCTCCTTATTTGGGATGTGGTGCTTCACGTACAGCTCTCGCCGGGGGTCGAAGATCGTCTCATTTGGCGATGGACGTCAG
ACCAGTGCTACTCAACGCGTTCGGCGTACTAGGCATTCTTCTATGGCCAGCATTCCTTTGCCTGTGTTGATCTTCTCTGG
TTCTTCCTTTGGTTTGCATTCCAGCAGCGCTGCTGGACGGTTGATCTCCTTCAGAAGTGTGGATCTTGAGACAGCGAACC
ACATCCTCCTCGACTACATGTTCGCTCGACAGGTCTGGTTCCGGGTGTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis