Browse Element(s) Details


OsAffx.30021.1.S1_at

Description tigr:9637.m02236
TID=OsAffx.30021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161572 Medicago nodulin N21-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2580011/11nodulin MtN21 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25730NANA9+15430738..15432537transposon protein, putative, unclassified
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30021.1.S1_at--1043--1831Chr09:15458146..15458170 (25 bp)
ACGCTCGGTGACCTGAACATGGCGA
LOC_Os09g25800
OsAffx.30021.1.S1_at--1115--8311Chr09:15457850..15458085 (25 bp)
GGCTCATATCTCAGGTGCCAATGTG
LOC_Os09g25800
OsAffx.30021.1.S1_at--309--7351Chr09:15457828..15457852 (25 bp)
GTGCAAATCGTATGCGGATCCTCTG
LOC_Os09g25800
OsAffx.30021.1.S1_at--1069--831Chr09:15457792..15457816 (25 bp)
ATGGACATGCTTCTTCTCGGCCCTG
LOC_Os09g25800
OsAffx.30021.1.S1_at--650--10211Chr09:15457579..15457603 (25 bp)
TTTGGTTCAGGCGTCAACTTCTACC
LOC_Os09g25800
OsAffx.30021.1.S1_at--214--6031Chr09:15457458..15457479 (22 bp)
GAGAGGCGCTGCACATCGGAAGCTT
LOC_Os09g25800
OsAffx.30021.1.S1_at--898--531Chr09:15456841..15456865 (25 bp)
ATCGCCGGCCTGTATGTGGTCTTGT
LOC_Os09g25800
OsAffx.30021.1.S1_at--471--6311Chr09:15456805..15456829 (25 bp)
GATGACATGAAACAGCCGGCCACGG
LOC_Os09g25800
OsAffx.30021.1.S1_at--714--8111Chr09:15456780..15456804 (25 bp)
GGACGACGAAGCCTTGCTCCTCGGA
LOC_Os09g25800
OsAffx.30021.1.S1_at--218--5791Chr09:15456745..15456769 (25 bp)
GACGACGTCGCAACTGAACCTCTAT
LOC_Os09g25800
OsAffx.30021.1.S1_at--1100--8971Chr09:15456731..15456755 (25 bp)
TGAACCTCTATTGGGAGACGCCTCG
LOC_Os09g25800
Target Sequence 
ACGCTCGGTGACCTGAACATGGCGAGCAGCAAGTGGGTGCTAGGCGCGCTCTGCCTCGTCGCCAGCAGCTCATGCTGGTC
ACTCTGGCTCATATCTCAGGTGCCAATGTGCAAATCGTATGCGGATCCTCTGTCCCTCTCGGCATGGACATGCTTCTTCT
CGGCCCTGCAATCCGCGGCGCTCGCCGTCTTCCTGGCCCCGGACCTGGACGCCTGGAAGATCCACTCGCTCTTCGAACTC
TCCGGCTACATCTTCGCCGGAGCCTTTGGTTCAGGCGTCAACTTCTACCTGCAGTCGTGGTGCACTTCGGTGAGGGGGCC
TCTCTACCCGGCCATGTTTACGCCCGTCTGCACGGTGCTCACCACCGCCGTCGCCGCTGCCGTTCACCGAGAGGCGCTGC
ACATCGGAAGCTTGCTGGGGGCAGCTGCTGTGATCGCCGGCCTGTATGTGGTCTTGTGGGGCAAAGCGGATGACATGAAA
CAGCCGGCCACGGGGACGACGAAGCCTTGCTCCTCGGATTCTCGGCGCGACGACGTCGCAACTGAACCTCTATTGGGAGA
CGCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis