Browse Element(s) Details


Os.12092.1.S1_at

Description gb:AK070341.1
DB_XREF= gi:32980365
TID=Os.12092.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0423B08.14 (P0423B08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050L03, full insert sequence.
FL= gb:AK070341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2581010/11Integral membrane protein DUF6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25740OsAffx.30020.1.A1_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_x_at11/119+15437140..15439298expressed protein
LOC_Os09g25740Os.52395.1.S1_at11/119+15437140..15439298expressed protein
LOC_Os09g25760Os.6961.1.S1_a_at11/119+15443235..15445530senescence-associated protein DH, putative, expressed
LOC_Os09g25770Os.49485.1.S1_at10/119+15446684..15448981Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.54575.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25784Os.52700.1.S1_at11/119+15449530..15455011Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25800OsAffx.30021.1.S1_at11/119+15456698..15458212nodulin MtN21 family protein, putative
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12092.1.S1_at--577--871Chr09:15464360..15464384 (25 bp)
AGGCGTGACGTTCTACCTGCAGTCG
LOC_Os09g25810
Os.12092.1.S1_at--471--9051Chr09:15464343..15464367 (25 bp)
TGCAGTCGTGGTGCATCTCGGTCAG
LOC_Os09g25810
Os.12092.1.S1_at--543--971Chr09:15464159..15464265 (25 bp)
AGGAGCTGCACATCGGCAGCTTGTT
LOC_Os09g25810
Os.12092.1.S1_at--894--1931Chr09:15464127..15464151 (25 bp)
ACGGCCATTGTTGCCGGGCTGTACA
LOC_Os09g25810
Os.12092.1.S1_at--109--6131Chr09:15464056..15464080 (25 bp)
GAGTGTGCCGGAGCACAGCCACGAC
LOC_Os09g25810
Os.12092.1.S1_at--333--6351Chr09:15464017..15464041 (25 bp)
GATGCGGTCGGAATCGCAGCTCGAC
LOC_Os09g25810
Os.12092.1.S1_at--1020--1571Chr09:15464000..15464024 (25 bp)
AGCTCGACGTGGGTGAAGGCATCAC
LOC_Os09g25810
Os.12092.1.S1_at--968--5291Chr09:15463986..15464010 (25 bp)
GAAGGCATCACGGAGCCGCTCCTAG
LOC_Os09g25810
Os.12092.1.S1_at--463--6651Chr09:15463917..15463941 (25 bp)
GTTGATAGCCAGTTGTATCTTCTAC
LOC_Os09g25810
Os.12092.1.S1_at--1122--10351Chr09:15463881..15463905 (25 bp)
TTTTATTTATGTCTCCTGGTAGGGA
LOC_Os09g25810
Os.12092.1.S1_at--118--10351Chr09:15463750..15463774 (25 bp)
TTTTTTAACCAAAGGCAGGAGCTCT
NONE
Target Sequence 
AGGCGTGACGTTCTACCTGCAGTCGTGGTGCATCTCGGTCAGGGGCCCTCTCTACTCCGCCATGTTCAACCCGCTCTGCA
CCGTCATCGCCACCGTCGTCGCCGCCGCCTTCCTCCACGAGGAGCTGCACATCGGCAGCTTGTTCGGGGCGACGGCCATT
GTTGCCGGGCTGTACATCGTGCTGTGGGGCAAAGCAGCGGATGGCGGCGGCAAGAGCGGCGGGAGTGTGCCGGAGCACAG
CCACGACGTGGAGAAGGCGGCGATGCGGTCGGAATCGCAGCTCGACGTGGGTGAAGGCATCACGGAGCCGCTCCTAGAGG
CCGGCAACACGGCCGAGAAGTAGGGTAGAGGAGATTTTGAAGTTGATAGCCAGTTGTATCTTCTACAAACGTTTTTTTTT
TATTTATGTCTCCTGGTAGGGAGAGCATGGTATTTTGGATGTAACTATATAACATTCGAAAGTATTTAGTATGGATAATT
TTCAAATGTAACTATTGTATAATTATTCTGTAACTATCTTATAGTTTTTTTTTTAACCAAAGGCAGGAGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis