Browse Element(s) Details


OsAffx.30023.1.S1_at

Description tigr:9637.m02241
TID=OsAffx.30023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2584011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25810Os.12092.1.S1_at10/119+15463769..15467832Integral membrane protein DUF6 containing protein, expressed
LOC_Os09g25820OsAffx.17897.1.S1_at9/119+15469871..15470315hypothetical protein
LOC_Os09g25830OsAffx.30022.1.S1_at11/119+15479865..15480667hypothetical protein
LOC_Os09g25840OsAffx.30023.1.S1_at11/119+15486592..15487062hypothetical protein
LOC_Os09g25850Os.26486.1.S1_at11/119+15492030..15496521Gl1 protein, putative, expressed
LOC_Os09g25860OsAffx.20969.1.S1_at1/119+15497414..15505057expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30023.1.S1_at--99--7573Chr12:14045938..14045957 (20 bp)
GGGCGACACGGGTGGCGACCGCCAC
NONE
OsAffx.30023.1.S1_at--423--4511Chr09:15486721..15486745 (25 bp)
GCCGCTGGAAACTGCGTGGCCGCAA
LOC_Os09g25840
OsAffx.30023.1.S1_at--204--3911Chr09:15486725..15486749 (25 bp)
CTGGAAACTGCGTGGCCGCAAGGAC
LOC_Os09g25840
OsAffx.30023.1.S1_at--243--6171Chr09:15486779..15486803 (25 bp)
GAGGACGCGGTTTGGAGCCCACGAC
LOC_Os09g25840
OsAffx.30023.1.S1_at--850--3251Chr09:15486824..15486848 (25 bp)
CAACGGCCTCGACGGAGCTGGGCGA
LOC_Os09g25840
OsAffx.30023.1.S1_at--235--7571Chr09:15486843..15486867 (25 bp)
GGGCGAAGGGCTAGCTCCCAGTGGT
LOC_Os09g25840
OsAffx.30023.1.S1_at--54--8311Chr09:15486851..15486875 (25 bp)
GGCTAGCTCCCAGTGGTGGCGGCAA
LOC_Os09g25840
OsAffx.30023.1.S1_at--855--3251Chr09:15486920..15486944 (25 bp)
CAACGGGCAGAGACGGTGTCGGCAA
LOC_Os09g25840
OsAffx.30023.1.S1_at--464--1651Chr09:15486955..15486979 (25 bp)
AGCGACGCGGCGTCACCAGATTTGG
LOC_Os09g25840
OsAffx.30023.1.S1_at--927--1831Chr09:15486959..15486983 (25 bp)
ACGCGGCGTCACCAGATTTGGCGTC
LOC_Os09g25840
OsAffx.30023.1.S1_at--939--3431Chr09:15486971..15486995 (25 bp)
CAGATTTGGCGTCCCCTGGCCAGAT
LOC_Os09g25840
Target Sequence 
GGGCGACACGGGTGGCGACCGCCACCACCGCAGCACTACCACCCCGCCTCCTTCCCTTCTTCGCCTCGCCGCCACCCGAG
CGGGCCGCTGGAAACTGCGTGGCCGCAAGGACGGCGGCGGCGGGGCCTCCTTTCTTCCCCCGAGGACGCGGTTTGGAGCC
CACGACCCCACCTGGATCTGGGGTGCCAACGGCCTCGACGGAGCTGGGCGAAGGGCTAGCTCCCAGTGGTGGCGGCAACG
GGGAGAGCGGCAGCGTCGACGGCGAGGCGGAGACGACCAGAACAACGGGCAGAGACGGTGTCGGCAAGGGTGACGACAGC
GACGCGGCGTCACCAGATTTGGCGTCCCCTGGCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis