Browse Element(s) Details


OsAffx.17899.1.S1_at

Description tigr:9637.m02252
TID=OsAffx.17899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ligand-gated ion channel protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2593010/11Ligand-gated ion channel family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25900Os.18770.1.S1_at6/119+15545365..15548202glycosyl transferase family 2 protein, putative, expressed
LOC_Os09g25910OsAffx.30026.1.S1_at11/119+15558430..15559764Basic 7S globulin precursor, putative
LOC_Os09g25920OsAffx.30027.1.S1_at11/119+15563062..15568469Receptor family ligand binding region containing protein, expressed
LOC_Os09g25930OsAffx.17899.1.S1_at10/119+15572825..15574398Ligand-gated ion channel family protein
LOC_Os09g25940OsAffx.17900.1.S1_at11/119+15575817..15579333Receptor family ligand binding region containing protein
LOC_Os09g25950Os.53948.1.S1_at11/119+15582193..15585474expressed protein
LOC_Os09g25960OsAffx.30030.1.S1_x_at11/119+15587269..15593377Receptor family ligand binding region containing protein
LOC_Os09g25970OsAffx.30029.1.S1_at11/119+15596968..15597719hypothetical protein
LOC_Os09g25980OsAffx.6401.1.S1_at9/119+15598148..15605591Receptor family ligand binding region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17899.1.S1_at--1085--1511Chr09:15574095..15574119 (25 bp)
AGCAGCAATGGTGGTATTTCCGCCG
LOC_Os09g25930
OsAffx.17899.1.S1_at--419--6871Chr09:15574082..15574106 (25 bp)
GTATTTCCGCCGTTGTGGACGAAAT
LOC_Os09g25930
OsAffx.17899.1.S1_at--994--8091Chr09:15574066..15574090 (25 bp)
GGACGAAATCCCATACATCAAACTA
LOC_Os09g25930
OsAffx.17899.1.S1_at--146--3411NONE
CAGCAGGCTTTGGATTTGCATTCCA
NONE
OsAffx.17899.1.S1_at--324--2911Chr09:15573265..15573289 (25 bp)
AAGGAATCCCCTCTACGTGGTGACA
LOC_Os09g25930
OsAffx.17899.1.S1_at--885--8611Chr09:15573248..15573272 (25 bp)
TGGTGACATCTCGAAGGCAATCCTC
LOC_Os09g25930
OsAffx.17899.1.S1_at--945--2851Chr09:15573163..15573187 (25 bp)
AAGTGCCGAAATGTGGGTCCTGTCA
LOC_Os09g25930
OsAffx.17899.1.S1_at--188--7791Chr09:15573148..15573172 (25 bp)
GGTCCTGTCACTATTTCGGGTAGTC
LOC_Os09g25930
OsAffx.17899.1.S1_at--29--3171Chr09:15573083..15573107 (25 bp)
AATTGCCTCAACTTCTTCGCTTTTG
LOC_Os09g25930
OsAffx.17899.1.S1_at--786--4891Chr09:15573065..15573089 (25 bp)
GCTTTTGATCGCTCTGGTTATTTAT
LOC_Os09g25930
OsAffx.17899.1.S1_at--148--6771Chr09:15572890..15572914 (25 bp)
GTTAAGCGCAGTGCATCTATTGTCA
LOC_Os09g25930
Target Sequence 
AGCAGCAATGGTGGTATTTCCGCCGTTGTGGACGAAATCCCATACATCAAACTATTTCTTGCAAAGCACTGTGAGGGGTA
CACAATGGTTGGACCAATTTATAAGACAGCAGGCTTTGGATTTGCATTCCAAAAGGAATCCCCTCTACGTGGTGACATCT
CGAAGGCAATCCTCAATATAACTGGGGGAGACACTATCATTCAGATAGAGAATAAATGGATTGGAGATCAAAATAAGTGC
CGAAATGTGGGTCCTGTCACTATTTCGGGTAGTCTAACCTTTGAAAGTTTTAAGGGTCTCTTCATTCTTACTGGAATTGC
CTCAACTTCTTCGCTTTTGATCGCTCTGGTTATTTATTTCTACAAAAACAAGCAAGTTCAATCTGGAATTGGAGATGCAG
AGCAAGATTTTCCACAAGAATTTAAAGCAGACACAATTGAGGAAGAGAAGGAACAAGAAGAAACTGGAGCAAAAGGGAAA
CAAAACATGAATCTGCAAAACAGCACGGTTAAGCGCAGTGCATCTATTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis