Browse Element(s) Details


OsAffx.30068.1.S1_at

Description tigr:9637.m02541
TID=OsAffx.30068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine carboxypeptidase II, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2884011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28790NANA9+17488301..17489681retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g28800OsAffx.17953.1.S1_x_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28800OsAffx.17953.1.S1_at11/119+17494021..17494374hypothetical protein
LOC_Os09g28810Os.6209.1.S1_at11/119+17498162..17502034RNA recognition motif family protein, expressed
LOC_Os09g28820OsAffx.17954.1.S1_at11/119+17502556..17503250hypothetical protein
LOC_Os09g28830OsAffx.30067.1.S1_at11/119+17505381..17509105Serine carboxypeptidase family protein
LOC_Os09g28840OsAffx.30068.1.S1_at11/119+17512624..17517474Serine carboxypeptidase family protein, expressed
LOC_Os09g28850Os.49127.1.S1_at11/119+17533413..17536817expressed protein
LOC_Os09g28860OsAffx.17955.1.S1_at11/119+17541290..17542005Late embryogenesis abundant protein D-34, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30068.1.S1_at--850--1311Chr09:17513634..17513658 (25 bp)
AGATGGAACCTTTCGATCCAGCGGC
LOC_Os09g28840
OsAffx.30068.1.S1_at--772--3391Chr09:17513498..17513640 (25 bp)
CAGCGGCTATTTACCTGGCTATGAT
LOC_Os09g28840
OsAffx.30068.1.S1_at--1101--10111Chr09:17513479..17513503 (25 bp)
TATGATCCGTGCATCGACTACTACA
LOC_Os09g28840
OsAffx.30068.1.S1_at--407--10471Chr09:17513447..17513471 (25 bp)
TTACCTCAACAATCCCGATGTGCAA
LOC_Os09g28840
OsAffx.30068.1.S1_at--1045--51Chr09:17513417..17513441 (25 bp)
ATTGCACGCACGAGCTGACACGAAC
LOC_Os09g28840
OsAffx.30068.1.S1_at--171--271Chr09:17512945..17512969 (25 bp)
ATATGCTCACTTACTGCGACAAGGT
LOC_Os09g28840
OsAffx.30068.1.S1_at--744--8091Chr09:17512910..17512934 (25 bp)
GGACCTTAATCTGACTATCACGCAT
LOC_Os09g28840
OsAffx.30068.1.S1_at--847--351Chr09:17512887..17512911 (25 bp)
ATAAGTGGCGTCCTTGGTACACACC
LOC_Os09g28840
OsAffx.30068.1.S1_at--52--2911Chr09:17512730..17512754 (25 bp)
AAGGAGGATTCACGCTAGCATCAGT
LOC_Os09g28840
OsAffx.30068.1.S1_at--1051--8071Chr09:17512701..17512725 (25 bp)
GGAGCTGGACATCTGGTTCCATCTT
LOC_Os09g28840
OsAffx.30068.1.S1_at--771--6691Chr09:17512686..17512710 (25 bp)
GTTCCATCTTTCCAGCCTAAGAGAT
LOC_Os09g28840
Target Sequence 
AGATGGAACCTTTCGATCCAGCGGCTATTTACCTGGCTATGATCCGTGCATCGACTACTACATCCCTCGTTACCTCAACA
ATCCCGATGTGCAAAAAGCATTGCACGCACGAGCTGACACGAACTGGTCAGGTTGCAATGGTGATATGGATTCAATATGC
TCACTTACTGCGACAAGGTACTCCGTCAAGGACCTTAATCTGACTATCACGCATAAGTGGCGTCCTTGGTACACACCTGA
TAATGAGGTTGGAGGCTATGTTCAGCAGTACGAAGGAGGATTCACGCTAGCATCAGTGAGGGGAGCTGGACATCTGGTTC
CATCTTTCCAGCCTAAGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis