Browse Element(s) Details


OsAffx.30096.1.S1_x_at

Description tigr:9637.m02693
TID=OsAffx.30096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3019011/11protein kinase family protein, putative, expressed
LOC_Os10g329901/11Leucine Rich Repeat family protein, expressed
LOC_Os08g385601/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30096.1.S1_x_at--1035--4571Chr09:18377594..18377618 (25 bp)
GCGCATCGCCGGATCGTACGGCTAC
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--994--6992Chr09:18377609..18377752 (25 bp)
GTACGGCTACATGGCACCAGAGTAC
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--527--9871Chr09:18377616..18377759 (25 bp)
TACATGGCACCAGAGTACGCGTCGA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--304--6091Chr09:18377747..18377771 (25 bp)
GAGTACGCGTCGATGCAGCGGATCA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--156--9391Chr09:18377756..18377780 (25 bp)
TCGATGCAGCGGATCACGGAGAAGA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--940--7632Chr09:18377883..18377907 (25 bp)
GGGACCACCTGCAGGCGAAGCGCGA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--415--1831Chr09:18377967..18377991 (25 bp)
ACGCCGACGTGCACGAGATGCGGCA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--1020--6331Chr09:18377983..18378007 (25 bp)
GATGCGGCAGGCGATGTCCGTGGCC
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--894--8992Chr09:18378048..18378072 (25 bp)
TGAAGGACGTCGTCGCGCTGCTCAA
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--1148--9071Chr09:18378066..18378090 (25 bp)
TGCTCAAGGAGATCCGGCGCCCCGC
LOC_Os09g30190
OsAffx.30096.1.S1_x_at--200--3951Chr09:18378171..18378195 (25 bp)
CGGCATCGCCGGTGTCGAGCTGCTC
LOC_Os09g30190
Target Sequence 
GCGCATCGCCGGATCGTACGGCTACATGGCACCAGAGTACGCGTCGATGCAGCGGATCACGGAGAAGAGCGACGTGTACA
GCTTCGGCGTGGTGATGCTGGAGATGCTGACGGGGCGGCACCCGCTGGACCCCACGCTGCCAGGCGGGGCCCACCTGGTG
CAGTGGGTGCGGGACCACCTGCAGGCGAAGCGCGACGCGGCGGAGCTCCTCGACGCGCGGCTCAGGGGCGCCGCCGGCGC
CGGCGCCGGCGCCGACGCCGACGTGCACGAGATGCGGCAGGCGATGTCCGTGGCCGCGCTCTGCGTGGCGCGCCGCGCCG
ACGACCGCCCCGCCATGAAGGACGTCGTCGCGCTGCTCAAGGAGATCCGGCGCCCCGCGCCGTCCGCCGCCGGCGACGAC
GCCAAGCCACCGCAGCCCACGCAGCCGCCGTCATTGCCCACCACCGTCACCGCGACGCCGGCATCGCCGGTGTCGAGCTG
CTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30096.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis