Browse Element(s) Details


OsAffx.30143.1.S1_at

Description tigr:9637.m03000
TID=OsAffx.30143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3575010/11hypothetical protein
LOC_Os04g590601/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30143.1.S1_at--331--6595Chr12:3646827..3646847 (21 bp)
GATTGAGGATCGCTGCCACCGACCC
NONE
OsAffx.30143.1.S1_at--74--5811Chr09:20559807..20559831 (25 bp)
GACCCCGTTTTCTGTGACTATGGGA
LOC_Os09g35750
OsAffx.30143.1.S1_at--405--811Chr09:20559826..20559850 (25 bp)
ATGGGATTTGTTCTTCTGAATATCA
LOC_Os09g35750
OsAffx.30143.1.S1_at--785--5551Chr09:20559854..20559878 (25 bp)
GAAACCTCTGAATTTCAACTTGCAT
LOC_Os09g35750
OsAffx.30143.1.S1_at--956--2511Chr09:20559870..20559894 (25 bp)
AACTTGCATGATATTGTGAACCCAC
LOC_Os09g35750
OsAffx.30143.1.S1_at--573--7351NONE
GTGAACCCACTAATTGAGCAAAGAG
NONE
OsAffx.30143.1.S1_at--650--6511Chr09:20560795..20560819 (25 bp)
GATATATGGTCTCTACATTGCACTT
LOC_Os09g35750
OsAffx.30143.1.S1_at--59--7811Chr09:20560802..20560826 (25 bp)
GGTCTCTACATTGCACTTATTATTC
LOC_Os09g35750
OsAffx.30143.1.S1_at--55--431Chr09:20560834..20560858 (25 bp)
ATCATCTCTATCATTTATGTTGCCT
LOC_Os09g35750
OsAffx.30143.1.S1_at--961--10111Chr09:20560849..20560873 (25 bp)
TATGTTGCCTATATTAGCTGGATTC
LOC_Os09g35750
OsAffx.30143.1.S1_at--818--10451Chr09:20560862..20560886 (25 bp)
TTAGCTGGATTCTTTTGGCCCACAG
LOC_Os09g35750
Target Sequence 
GATTGAGGATCGCTGCCACCGACCCCGTTTTCTGTGACTATGGGATTTGTTCTTCTGAATATCATTTGAAACCTCTGAAT
TTCAACTTGCATGATATTGTGAACCCACTAATTGAGCAAAGAGAGGTGATATATGGTCTCTACATTGCACTTATTATTCT
GGAAATATCATCTCTATCATTTATGTTGCCTATATTAGCTGGATTCTTTTGGCCCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis