Browse Element(s) Details


OsAffx.30149.1.S1_s_at

Description tigr:9637.m03041
TID=OsAffx.30149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=zinc finger protein SHI, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3616011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36150NANA9+20826782..20828631retrotransposon, putative, centromere-specific
LOC_Os09g36160OsAffx.30149.1.S1_s_at11/119+20838039..20839803expressed protein
LOC_Os09g36160Os.51763.1.S1_x_at1/119+20838039..20839803expressed protein
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0048479biological_processstyle development
GO:0048480biological_processstigma development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30149.1.S1_s_at--649--8231Chr09:20838431..20838455 (25 bp)
GGCAACATCATCGTGTCATCGGCTG
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--890--4411Chr09:20838274..20838298 (25 bp)
GCCATGCTGTAACGCCACTACAATC
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--97--9531Chr09:20838249..20838273 (25 bp)
TCTCACTCGCTGCAACTGTCAATTG
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--77--9751Chr09:20838231..20838255 (25 bp)
TCAATTGCTTTGGTCGATCTCGATC
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--235--7811Chr09:20838220..20838244 (25 bp)
GGTCGATCTCGATCTCTTGAGAATT
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--624--5211Chr09:20838200..20838224 (25 bp)
GAATTCTTAGCTTCTGATCTCCCTT
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--302--9511Chr09:20838183..20838207 (25 bp)
TCTCCCTTTGATATCTCGTTGCATA
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--294--6271Chr09:20838154..20838178 (25 bp)
GATGTGTCTTCTTCTAGAGCCTAGC
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--598--151Chr09:20838120..20838144 (25 bp)
ATTAGGCAGGCGAACCCTTTAGACT
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--321--5451Chr09:20838109..20838133 (25 bp)
GAACCCTTTAGACTCTTGTTTGCTT
LOC_Os09g36160
OsAffx.30149.1.S1_s_at--484--4911Chr09:20838088..20838112 (25 bp)
GCTTCTCTTCTTGGGAGCCATTTGA
LOC_Os09g36160
Target Sequence 
GGCAACATCATCGTGTCATCGGCTGTGGTGATGGACCCGTACCCGACGCCCGGGCCCTACGGCGCGTTCCCCGCCGGCAC
GCCATTCTTCCACGGCCACCCGCGGCCGTGACCGGCGCCCACTCCGGTCGCCGGCCGGCCGTCCGGCCAACGTCGCCGCC
ATGCTGTAACGCCACTACAATCTCTCACTCGCTGCAACTGTCAATTGCTTTGGTCGATCTCGATCTCTTGAGAATTCTTA
GCTTCTGATCTCCCTTTGATATCTCGTTGCATAAATTGATGTGTCTTCTTCTAGAGCCTAGCTTAGCTTAAATTAGGCAG
GCGAACCCTTTAGACTCTTGTTTGCTTCTCTTCTTGGGAGCCATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30149.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis