Browse Element(s) Details


Os.49939.1.S1_at

Description gb:AK119405.1
DB_XREF= gi:37989028
TID=Os.49939.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E10, full insert sequence.
FL= gb:AK119405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3618011/11Glycosyl transferase family 8 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36150NANA9+20826782..20828631retrotransposon, putative, centromere-specific
LOC_Os09g36160OsAffx.30149.1.S1_s_at11/119+20838039..20839803expressed protein
LOC_Os09g36160Os.51763.1.S1_x_at1/119+20838039..20839803expressed protein
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49939.1.S1_at--949--6271Chr09:20856893..20856917 (25 bp)
GATGTAAAGCTGACGGATATCACCC
LOC_Os09g36180
Os.49939.1.S1_at--941--1671Chr09:20856868..20856892 (25 bp)
AGCCTGATCAGAAGTGCCCCTTCTC
LOC_Os09g36180
Os.49939.1.S1_at--882--4891Chr09:20856831..20856855 (25 bp)
GCTTCGCTCGATCAAAGTATAGTAG
LOC_Os09g36180
Os.49939.1.S1_at--847--4711Chr09:20856801..20856825 (25 bp)
GCTGGAGCTATTGATTGCCCTTCTC
LOC_Os09g36180
Os.49939.1.S1_at--429--2411Chr09:20856756..20856780 (25 bp)
AAAAAGCTAGATGTTCTCACGAACG
LOC_Os09g36180
Os.49939.1.S1_at--619--3351Chr09:20856739..20856763 (25 bp)
CACGAACGTGTGTTTTAGGCTTACA
LOC_Os09g36180
Os.49939.1.S1_at--880--911Chr09:20856723..20856747 (25 bp)
AGGCTTACAGTAGTTCTTTCGTTCA
LOC_Os09g36180
Os.49939.1.S1_at--503--7311Chr09:20856689..20856713 (25 bp)
GTGCTGTTTTGTTTGACCATCGATA
LOC_Os09g36180
Os.49939.1.S1_at--641--10411Chr09:20856635..20856659 (25 bp)
TTAGGGTGGGTGTTGCCATCGAAAT
LOC_Os09g36180
Os.49939.1.S1_at--638--9191Chr09:20856622..20856646 (25 bp)
TGCCATCGAAATTGTCAGGAGTATT
LOC_Os09g36180
Os.49939.1.S1_at--803--5151Chr09:20856593..20856617 (25 bp)
GCAACTGACATTGCCATATGTGTAA
LOC_Os09g36180
Target Sequence 
GATGTAAAGCTGACGGATATCACCCAGCCTGATCAGAAGTGCCCCTTCTCCCTGCGAAACATGCTTCGCTCGATCAAAGT
ATAGTAGCTAGAGCTGGAGCTATTGATTGCCCTTCTCCCTGTCTTTTTTTTTAAAAAAAAAGCTAGATGTTCTCACGAAC
GTGTGTTTTAGGCTTACAGTAGTTCTTTCGTTCAATTGATGATGTGCTGTTTTGTTTGACCATCGATATTATAAGGAGAA
ACCTGTTGATTGTGTGTTTAGGGTGGGTGTTGCCATCGAAATTGTCAGGAGTATTGTTGGCAACTGACATTGCCATATGT
GTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis