Browse Element(s) Details


Os.11666.1.S1_at

Description gb:AK105810.1
DB_XREF= gi:32991019
TID=Os.11666.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B12, full insert sequence.
FL= gb:AK105810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3620011/11senescence-inducible chloroplast stay-green protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11666.1.S1_at--759--2171Chr09:20868583..20868607 (25 bp)
ACACGCATGCAATGTCGCCAAATGA
LOC_Os09g36200
Os.11666.1.S1_at--986--3331Chr09:20868582..20868606 (25 bp)
CACGCATGCAATGTCGCCAAATGAC
LOC_Os09g36200
Os.11666.1.S1_at--255--1831Chr09:20868581..20868605 (25 bp)
ACGCATGCAATGTCGCCAAATGACG
LOC_Os09g36200
Os.11666.1.S1_at--851--4111Chr09:20868580..20868604 (25 bp)
CGCATGCAATGTCGCCAAATGACGC
LOC_Os09g36200
Os.11666.1.S1_at--1114--651Chr09:20868577..20868601 (25 bp)
ATGCAATGTCGCCAAATGACGCTGC
LOC_Os09g36200
Os.11666.1.S1_at--759--5311Chr09:20868353..20868377 (25 bp)
GAAGTCGACACACAAAGACAGATCT
LOC_Os09g36200
Os.11666.1.S1_at--873--7211Chr09:20868350..20868374 (25 bp)
GTCGACACACAAAGACAGATCTCGT
LOC_Os09g36200
Os.11666.1.S1_at--661--5611Chr09:20868347..20868371 (25 bp)
GACACACAAAGACAGATCTCGTTTC
LOC_Os09g36200
Os.11666.1.S1_at--508--2191Chr09:20868344..20868368 (25 bp)
ACACAAAGACAGATCTCGTTTCATT
LOC_Os09g36200
Os.11666.1.S1_at--1147--2171Chr09:20868342..20868366 (25 bp)
ACAAAGACAGATCTCGTTTCATTTG
LOC_Os09g36200
Os.11666.1.S1_at--739--7931Chr09:20868242..20868266 (25 bp)
GGATTAATTATGAAACACGATTGTT
LOC_Os09g36200
Target Sequence 
ACACGCATGCAATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTTTAATTATTCGTAGTGGCATTTAGCTCAGC
TCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGTGTGGTGAGCTTGTAAATAGAAGAACACTA
GTAGATGGCAAGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCAAAAATGGCAATTATTAGATGAAGTCGACA
CACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTACGTCGATGAGGACATGACTGGATTTGTATAGCAAATTA
GTACTAGCAGCTAATAAGTGTGGATTAATTATGAAACACGATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis