Browse Element(s) Details


Os.11666.1.S1_s_at

Description gb:AK105810.1
DB_XREF= gi:32991019
TID=Os.11666.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11666 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B12, full insert sequence.
FL= gb:AK105810.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3620011/11senescence-inducible chloroplast stay-green protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11666.1.S1_s_at--796--4071Chr09:20868612..20868636 (25 bp)
CGAATTCGTTTGGTTGCCATGGTAC
LOC_Os09g36200
Os.11666.1.S1_s_at--996--3151Chr09:20868610..20868634 (25 bp)
AATTCGTTTGGTTGCCATGGTACAC
LOC_Os09g36200
Os.11666.1.S1_s_at--531--9391Chr09:20868607..20868631 (25 bp)
TCGTTTGGTTGCCATGGTACACCTA
LOC_Os09g36200
Os.11666.1.S1_s_at--901--10231Chr09:20868604..20868628 (25 bp)
TTTGGTTGCCATGGTACACCTACAC
LOC_Os09g36200
Os.11666.1.S1_s_at--478--10851Chr09:20868603..20868627 (25 bp)
TTGGTTGCCATGGTACACCTACACG
LOC_Os09g36200
Os.11666.1.S1_s_at--168--6691Chr09:20868600..20868624 (25 bp)
GTTGCCATGGTACACCTACACGCAT
LOC_Os09g36200
Os.11666.1.S1_s_at--933--4411Chr09:20868597..20868621 (25 bp)
GCCATGGTACACCTACACGCATGCA
LOC_Os09g36200
Os.11666.1.S1_s_at--530--5271Chr09:20868460..20868484 (25 bp)
GAATGAGTGTGGTGAGCTTGTAAAT
LOC_Os09g36200
Os.11666.1.S1_s_at--834--431Chr09:20868332..20868356 (25 bp)
ATCTCGTTTCATTTGTACATTCTAC
LOC_Os09g36200
Os.11666.1.S1_s_at--704--7011Chr09:20868263..20868287 (25 bp)
GTACTAGCAGCTAATAAGTGTGGAT
LOC_Os09g36200
Os.11666.1.S1_s_at--644--3711Chr09:20868260..20868284 (25 bp)
CTAGCAGCTAATAAGTGTGGATTAA
LOC_Os09g36200
Target Sequence 
CGAATTCGTTTGGTTGCCATGGTACACCTACACGCATGCAATGTCGCCAAATGACGCTGCGTGCTTTGCGTTAAATTCTT
TAATTATTCGTAGTGGCATTTAGCTCAGCTCAGCTCAGCTCTGCAATTAGCACATATTTGATTAGCTTTAGGGAATGAGT
GTGGTGAGCTTGTAAATAGAAGAACACTAGTAGATGGCAAGCAAATGGAAACGATCGATGATGCAGTAGATGTTACTGCA
AAAATGGCAATTATTAGATGAAGTCGACACACAAAGACAGATCTCGTTTCATTTGTACATTCTACAGTCTACGTCGATGA
GGACATGACTGGATTTGTATAGCAAATTAGTACTAGCAGCTAATAAGTGTGGATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11666.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis