Browse Element(s) Details


OsAffx.6491.1.S1_at

Description tigr:9637.m03043
TID=OsAffx.6491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=68 kDa protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3618011/11Glycosyl transferase family 8 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36150NANA9+20826782..20828631retrotransposon, putative, centromere-specific
LOC_Os09g36160OsAffx.30149.1.S1_s_at11/119+20838039..20839803expressed protein
LOC_Os09g36160Os.51763.1.S1_x_at1/119+20838039..20839803expressed protein
LOC_Os09g36170NANA9+20843528..20844198hypothetical protein
LOC_Os09g36180Os.49939.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36180OsAffx.6491.1.S1_at11/119+20851801..20860490Glycosyl transferase family 8 protein
LOC_Os09g36190Os.7210.1.S1_at11/119+20862162..20866259Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g36200Os.11666.1.S1_s_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36200Os.11666.1.S1_at11/119+20868241..20870596senescence-inducible chloroplast stay-green protein 2, putative, expressed
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6491.1.S1_at--579--9091Chr09:20852357..20852381 (25 bp)
TGCTCGACGCGGAGTTCGTGCCCAA
LOC_Os09g36180
OsAffx.6491.1.S1_at--363--9371Chr09:20852354..20852378 (25 bp)
TCGACGCGGAGTTCGTGCCCAAGGT
LOC_Os09g36180
OsAffx.6491.1.S1_at--1109--6691Chr09:20852317..20852341 (25 bp)
GTTCGCGAAGCTGATCCCGGACGGC
LOC_Os09g36180
OsAffx.6491.1.S1_at--408--1611Chr09:20852309..20852333 (25 bp)
AGCTGATCCCGGACGGCGTGTCGCA
LOC_Os09g36180
OsAffx.6491.1.S1_at--710--7451Chr09:20852292..20852316 (25 bp)
GTGTCGCACCTGACGACGCGGGTGA
LOC_Os09g36180
OsAffx.6491.1.S1_at--132--9731Chr09:20852129..20852153 (25 bp)
TCAAGCGCGAGATCGTGCAGTGGGC
LOC_Os09g36180
OsAffx.6491.1.S1_at--1127--1391Chr09:20852012..20852036 (25 bp)
AGACGGCCATGCTGTGCACGCAGAG
LOC_Os09g36180
OsAffx.6491.1.S1_at--989--3871Chr09:20852001..20852025 (25 bp)
CTGTGCACGCAGAGCAGCGCCGAGA
LOC_Os09g36180
OsAffx.6491.1.S1_at--657--8591Chr09:20851955..20851979 (25 bp)
TGGTCGACATGCTCAGGTTCAGCGG
LOC_Os09g36180
OsAffx.6491.1.S1_at--210--4111Chr09:20851951..20851975 (25 bp)
CGACATGCTCAGGTTCAGCGGCGGC
LOC_Os09g36180
OsAffx.6491.1.S1_at--1110--4371Chr09:20851916..20851940 (25 bp)
CCAAGGAGATCGTCCCCGTGGCGGC
LOC_Os09g36180
Target Sequence 
TGCTCGACGCGGAGTTCGTGCCCAAGGTGGCCGACTTCGGGTTCGCGAAGCTGATCCCGGACGGCGTGTCGCACCTGACG
ACGCGGGTGAAGGGGACGCTCGGGTACCTGGCGCCGGAGTACGCCATGTGGGGGAAGGTCTCCGAGAGCTGCGACGTCTA
CAGCTTCGGCGTCCTCCTGCTGGAGCTCGTCAGCGCGCGCCGCCCGCTGGAGAAGCTCCCCGGCGGCGTCAAGCGCGAGA
TCGTGCAGTGGGCGGCGCCGCTGGTGGAGCGCCGCAGGTGGGAGCGCCTCGCCGACCCAAGGCTCGCCGGGCGCTTCGAC
GCCGCGCAGCTCCGCGCCGTGGTGGAGACGGCCATGCTGTGCACGCAGAGCAGCGCCGAGAGCCGCCCGGCGATGGCCGA
GGTGGTCGACATGCTCAGGTTCAGCGGCGGCGAGAGGCGCACCAAGGAGATCGTCCCCGTGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis