Browse Element(s) Details


OsAffx.30172.1.S1_at

Description tigr:9637.m03184
TID=OsAffx.30172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3753011/11hypothetical protein
LOC_Os08g023501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein
LOC_Os09g37540Os.15026.1.S1_at10/119+21642247..21644235expressed protein
LOC_Os09g37550Os.14491.2.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37550Os.47463.1.S1_x_at4/119+21649574..21650249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g37560OsAffx.18029.1.S1_at11/119+21651440..21652048hypothetical protein
LOC_Os09g37570Os.53529.1.S1_at11/119+21652596..21654852F-box domain containing protein, expressed
LOC_Os09g37580OsAffx.30173.1.S1_at9/119+21655731..21663947expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30172.1.S1_at--1006--5271Chr09:21636971..21637395 (25 bp)
GAATGGATGCTGACTGCGTGTACTT
LOC_Os09g37530
OsAffx.30172.1.S1_at--756--6331Chr09:21636966..21637390 (25 bp)
GATGCTGACTGCGTGTACTTACCAT
LOC_Os09g37530
OsAffx.30172.1.S1_at--295--8951Chr09:21636961..21637385 (25 bp)
TGACTGCGTGTACTTACCATTTTCC
LOC_Os09g37530
OsAffx.30172.1.S1_at--27--8751Chr09:21636953..21636977 (25 bp)
TGTACTTACCATTTTCCGCGCGGTT
LOC_Os09g37530
OsAffx.30172.1.S1_at--634--171Chr09:21636943..21636967 (25 bp)
ATTTTCCGCGCGGTTACTAGATCTC
LOC_Os09g37530
OsAffx.30172.1.S1_at--725--7871Chr09:21636932..21636956 (25 bp)
GGTTACTAGATCTCCACGGTAAGGT
LOC_Os09g37530
OsAffx.30172.1.S1_at--253--1912Chr09:21636922..21636941 (20 bp)
ACGGTAAGGTGGTTACCGCGCTGCT
LOC_Os09g37530
OsAffx.30172.1.S1_at--1101--9951Chr09:21636774..21636928 (25 bp)
TACCGCGCTGCTGGTTCGTTGGCCA
LOC_Os09g37530
OsAffx.30172.1.S1_at--690--9131Chr09:21636766..21636790 (25 bp)
TGCTGGTTCGTTGGCCACAACTTTG
LOC_Os09g37530
OsAffx.30172.1.S1_at--294--6871Chr09:21636733..21636757 (25 bp)
GTTTGGTTGATTTAAGCCCAGAGCC
LOC_Os09g37530
OsAffx.30172.1.S1_at--314--10331Chr09:21636723..21636747 (25 bp)
TTTAAGCCCAGAGCCAGTTTGTTCT
LOC_Os09g37530
Target Sequence 
GAATGGATGCTGACTGCGTGTACTTACCATTTTCCGCGCGGTTACTAGATCTCCACGGTAAGGTGGTTACCGCGCTGCTG
GTTCGTTGGCCACAACTTTGGGGGTTTAGTTTGGTTGATTTAAGCCCAGAGCCAGTTTGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis