Browse Element(s) Details


Os.48703.1.S1_at

Description gb:AK073078.1
DB_XREF= gi:32983101
TID=Os.48703.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033016L03, full insert sequence.
FL= gb:AK073078.1 gb:AK104984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3751011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed
LOC_Os09g37470OsAffx.30169.1.S1_at1/119+21600648..21601248auxin induced protein, putative, expressed
LOC_Os09g37480Os.18493.1.S1_at11/119+21602448..21603061auxin induced protein, putative, expressed
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein
LOC_Os09g37530OsAffx.30172.1.S1_at11/119+21636693..21637462hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48703.1.S1_at--1137--6691Chr09:21610167..21610191 (25 bp)
GTTCTACTCGGAAGGTACACTCAGA
LOC_Os09g37510
Os.48703.1.S1_at--464--8431Chr09:21610065..21610089 (25 bp)
GGCCAGCTCCTAGAAGTGAACCTTA
LOC_Os09g37510
Os.48703.1.S1_at--477--571Chr09:21610041..21610065 (25 bp)
ATCCAGGAAGTCGTCACTCCGAAGA
LOC_Os09g37510
Os.48703.1.S1_at--480--2351Chr09:21609974..21609998 (25 bp)
AAACCTTAGTTCTCGTGTTCATCCA
LOC_Os09g37510
Os.48703.1.S1_at--65--251Chr09:21609948..21609972 (25 bp)
ATATGCCTCTGGACTACGAAACTCT
LOC_Os09g37510
Os.48703.1.S1_at--18--5551Chr09:21609931..21609955 (25 bp)
GAAACTCTTACTGCACGCTTCGAGG
LOC_Os09g37510
Os.48703.1.S1_at--1011--7611Chr09:21609895..21609919 (25 bp)
GGGAAGCTCCCATAGTGTGCAATTG
LOC_Os09g37510
Os.48703.1.S1_at--1139--9651Chr09:21609797..21609821 (25 bp)
TACTTCCAGTACTCTAGGGCCTTTT
LOC_Os09g37510
Os.48703.1.S1_at--109--9131Chr09:21609751..21609775 (25 bp)
TGCTGTTTCAAACTGCTCCTACATT
LOC_Os09g37510
Os.48703.1.S1_at--841--6191Chr09:21609682..21609706 (25 bp)
GAGGCACCTACTGTAATCTGCAGAG
LOC_Os09g37510
Os.48703.1.S1_at--694--5311Chr09:21609652..21609676 (25 bp)
GAAGGTACTCCTGCACTATTTGTAA
LOC_Os09g37510
Target Sequence 
GTTCTACTCGGAAGGTACACTCAGAGNTNAAGTTTGATGATTCAGAGGGATTGAATTCAGAGACAGAGGNCGAAAGTGAT
ACGGAGATACAATCCATTGAAAGGCCAGCTCCTAGAAGTGAACCTTATCCAGGAAGTCGTCACTCCGAAGATGAAGAGAA
AGAAAACCATGAATTACCTGATTTGCCGAAGGCAAACCTTAGTTCTCGTGTTCATCCAAATATGCCTCTGGACTACGAAA
CTCTTACTGCACGCTTCGAGGCGCTCAAATCTGGGAAGCTCCCATAGTGTGCAATTGAAGATGTAGCATATAATGCTAAA
TTTCTGCTACTTCTACAAAGAACCATATGATATACCAAATACTAGTAGGTTACTTCCAGTACTCTAGGGCCTTTTATTTT
GGTGAACTGAAAGATTTGCTGTTTCAAACTGCTCCTACATTCATNTTATTCAAGTATATATATGTGTTATCTGAAGTGAG
AATTTGAGGCACCTACTGTAATCTGCAGAGTGCTGGAAGGTACTCCTGCACTATTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis