Browse Element(s) Details


OsAffx.18028.1.S1_at

Description tigr:9637.m03177
TID=OsAffx.18028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-induced SAUR-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3746011/11auxin induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37360OsAffx.18026.1.S1_at11/119+21574181..21575278Pectinesterase family protein
LOC_Os09g37370OsAffx.30170.1.S1_at2/119+21577085..21577429hypothetical protein
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed
LOC_Os09g37470OsAffx.30169.1.S1_at1/119+21600648..21601248auxin induced protein, putative, expressed
LOC_Os09g37480Os.18493.1.S1_at11/119+21602448..21603061auxin induced protein, putative, expressed
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18028.1.S1_at--299--9051Chr09:21599312..21599336 (25 bp)
TGCAGAGGATCAAGACGGCCGCCAG
LOC_Os09g37460
OsAffx.18028.1.S1_at--461--1991Chr09:21599402..21599426 (25 bp)
ACTGCGCCGTGTACACGTCCGACGG
LOC_Os09g37460
OsAffx.18028.1.S1_at--702--3632Chr09:21607732..21607756 (25 bp)
CTTGCTGAGGAGGAACGCGTCGGAG
NONE
OsAffx.18028.1.S1_at--707--10751Chr09:21599603..21599627 (25 bp)
TTGAGAGGGCGTTCCTGAGCTCGGT
LOC_Os09g37460
OsAffx.18028.1.S1_at--503--1591Chr09:21599620..21599644 (25 bp)
AGCTCGGTGGTGACGATGCCTTGCC
LOC_Os09g37460
OsAffx.18028.1.S1_at--1032--3971Chr09:21599624..21599648 (25 bp)
CGGTGGTGACGATGCCTTGCCAGAA
LOC_Os09g37460
OsAffx.18028.1.S1_at--726--8612Chr09:21607785..21607809 (25 bp)
TGGTGACGATGCCTTGCCAGAATTC
NONE
OsAffx.18028.1.S1_at--265--7372Chr09:21607787..21607811 (25 bp)
GTGACGATGCCTTGCCAGAATTCAG
NONE
OsAffx.18028.1.S1_at--219--1892Chr09:21599632..21599656 (25 bp)
ACGATGCCTTGCCAGAATTCAGGCT
LOC_Os09g37460
OsAffx.18028.1.S1_at--823--5211Chr09:21599646..21599670 (25 bp)
GAATTCAGGCTGCACGATGCCACCT
LOC_Os09g37460
OsAffx.18028.1.S1_at--286--911Chr09:21599652..21599676 (25 bp)
AGGCTGCACGATGCCACCTGTGGCG
LOC_Os09g37460
Target Sequence 
TGCAGAGGATCAAGACGGCCGCCAGCAACAGGGAGGACGACGACGCCGGCTGCACGTCGACCTCGCCGTCGCCGGTGGCG
GACAAGGGCCACTGCGCCGTGTACACGTCCGACGGGGCGCGGTTCGAGGTGCCGTTGCCGTACCTCGGCACGACGGTGTT
CGTCGAGCTCCTGAGGATGTCGCAGGAGGAGTTCGGGTTCGCCGGCGGCGACGGAAGGATCACGCTGCCCTGCGACGCGG
CGGCGATGGAGTACGTGATGTGCTTGCTGAGGAGGAACGCGTCGGAGGAGGTTGAGAGGGCGTTCCTGAGCTCGGTGGTG
ACGATGCCTTGCCAGAATTCAGGCTGCACGATGCCACCTGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis