Browse Element(s) Details


OsAffx.18026.1.S1_at

Description tigr:9637.m03166
TID=OsAffx.18026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pectinesterase 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3736011/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37310OsAffx.382.1.S1_at2/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37310OsAffx.21756.1.S1_at1/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37320NANA9+21558741..21563666retrotransposon protein, putative, unclassified
LOC_Os09g37330Os.39652.1.S1_at11/119+21565259..21565999auxin induced protein, putative, expressed
LOC_Os09g37340NANA9+21567180..21567572hypothetical protein
LOC_Os09g37350NANA9+21568985..21569401auxin induced protein, putative, expressed
LOC_Os09g37360OsAffx.18026.1.S1_at11/119+21574181..21575278Pectinesterase family protein
LOC_Os09g37370OsAffx.30170.1.S1_at2/119+21577085..21577429hypothetical protein
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18026.1.S1_at--349--8251Chr09:21574882..21575002 (25 bp)
GGCACCGTCACTGTTGATGGCATTG
LOC_Os09g37360
OsAffx.18026.1.S1_at--1045--7231Chr09:21574852..21574876 (25 bp)
GTCGCCATTGATCTGACCATCGAGA
LOC_Os09g37360
OsAffx.18026.1.S1_at--869--9131Chr09:21574756..21574780 (25 bp)
TGCGGCATCAGGGTGTACCAGGACA
LOC_Os09g37360
OsAffx.18026.1.S1_at--150--8151Chr09:21574736..21574760 (25 bp)
GGACACGCTGTACGCCAAGAGCAAC
LOC_Os09g37360
OsAffx.18026.1.S1_at--896--9392Chr03:14417672..14417696 (25 bp)
TCGTTCCAGGACTGCAACATCTACG
NONE
OsAffx.18026.1.S1_at--781--4031Chr09:21574431..21574455 (25 bp)
CGTTCTCGCGCGTGGTGTTCATGGA
LOC_Os09g37360
OsAffx.18026.1.S1_at--111--4231Chr09:21574395..21574419 (25 bp)
CCGACGTGATCGATCCCAAGGGATG
LOC_Os09g37360
OsAffx.18026.1.S1_at--540--1911Chr09:21574347..21574371 (25 bp)
ACGTGTCCAACGTCTACTATGGAGA
LOC_Os09g37360
OsAffx.18026.1.S1_at--116--3931Chr09:21574289..21574313 (25 bp)
CGGCCGCGTGAAGTGGACTAGTTTC
LOC_Os09g37360
OsAffx.18026.1.S1_at--509--8111Chr09:21574275..21574299 (25 bp)
GGACTAGTTTCCACGTCATCCAAGA
LOC_Os09g37360
OsAffx.18026.1.S1_at--79--591Chr09:21574258..21574282 (25 bp)
ATCCAAGACGCATCGGAGGCGGCCA
LOC_Os09g37360
Target Sequence 
GGCACCGTCACTGTTGATGGCATTGGCTTCGTCGCCATTGATCTGACCATCGAGAACACGGCCGGAGCAGAGAACGAGCA
GGCGGTGGCGCTGCTGTCCAACTCCGACGCCTCGGCGCTGTACCGCTGCGGCATCAGGGTGTACCAGGACACGCTGTACG
CCAAGAGCAACAGCGCCACCGGCTTCTCGTTCCAGGACTGCAACATCTACGCCGACGACGACCTCCTCCGCGGCGCCCCC
GCCGGCGGCGTGGAGACCTACCTCGGCCGGCCGTGGCAGCCGATCCCGGACAGCCCGCCGTTCTCGCGCGTGGTGTTCAT
GGAGTGCGGCATGTCCGACGTGATCGATCCCAAGGGATGGCTGCCATGGGAAGGGAGGACCGACGTGTCCAACGTCTACT
ATGGAGAGTACGAGAACACCGGGGATGGTGCTGACGTCAGCGGCCGCGTGAAGTGGACTAGTTTCCACGTCATCCAAGAC
GCATCGGAGGCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis