Browse Element(s) Details


Os.51408.1.S1_at

Description gb:AK062728.1
DB_XREF= gi:32972746
TID=Os.51408.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E02, full insert sequence.
FL= gb:AK062728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3749011/11Auxin responsive protein
LOC_Os09g373902/11Auxin responsive protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed
LOC_Os09g37470OsAffx.30169.1.S1_at1/119+21600648..21601248auxin induced protein, putative, expressed
LOC_Os09g37480Os.18493.1.S1_at11/119+21602448..21603061auxin induced protein, putative, expressed
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein
LOC_Os09g37520Os.16267.1.S1_at11/119+21630389..21636245expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51408.1.S1_at--54--9051Chr09:21604490..21604514 (25 bp)
TGCAGCACAGCCACAGCGTATGTCG
LOC_Os09g37490
Os.51408.1.S1_at--238--4651Chr09:21604475..21604499 (25 bp)
GCGTATGTCGCAGACAAGGGCCATT
LOC_Os09g37490
Os.51408.1.S1_at--803--7551Chr09:21604458..21604482 (25 bp)
GGGCCATTGTGTGTTGTACACCACT
LOC_Os09g37490
Os.51408.1.S1_at--883--1832Chr09:21582011..21582031 (21 bp)
ACGCTTCGAGGTTCCACTGATGTAC
LOC_Os09g37390
Os.51408.1.S1_at--279--9711Chr09:21604399..21604423 (25 bp)
TCAACACGGCGATCTTCTGTGAGCT
LOC_Os09g37490
Os.51408.1.S1_at--135--10611Chr09:21604385..21604409 (25 bp)
TTCTGTGAGCTCTTAAGGGTGTCTC
LOC_Os09g37490
Os.51408.1.S1_at--848--71Chr09:21604323..21604347 (25 bp)
ATTGCCTTGTGATGCCTCAGTGATG
LOC_Os09g37490
Os.51408.1.S1_at--412--8911Chr09:21604254..21604278 (25 bp)
TGAGAAGGCGCTCCTGAGCTCCATA
LOC_Os09g37490
Os.51408.1.S1_at--777--5891Chr09:21604239..21604263 (25 bp)
GAGCTCCATAGTTAGGCCATGTCTT
LOC_Os09g37490
Os.51408.1.S1_at--935--8711Chr09:21604220..21604244 (25 bp)
TGTCTTAATACTAGTGTGGTTCCAC
LOC_Os09g37490
Os.51408.1.S1_at--142--7512Chr09:21582230..21582254 (25 bp)
GTGGTTCCACCAATGAGACTCAATC
LOC_Os09g37390
Target Sequence 
TGCAGCACAGCCACAGCGTATGTCGCAGACAAGGGCCATTGTGTGTTGTACACCACTGATGGGGCACGCTTCGAGGTTCC
ACTGATGTACCTCAACACGGCGATCTTCTGTGAGCTCTTAAGGGTGTCTCAAGAGGAGTTTGGCTTTGCAAGCAACAACA
AGATCACATTGCCTTGTGATGCCTCAGTGATGGAGTACGTGATGTGTTTGATTAGGAGAGATGCCTCTGAAGAGATTGAG
AAGGCGCTCCTGAGCTCCATAGTTAGGCCATGTCTTAATACTAGTGTGGTTCCACCAATGAGACTCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis