Browse Element(s) Details


OsAffx.6505.1.S1_at

Description tigr:9637.m03175
TID=OsAffx.6505.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-induced SAUR-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3744011/11auxin induced protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37360OsAffx.18026.1.S1_at11/119+21574181..21575278Pectinesterase family protein
LOC_Os09g37370OsAffx.30170.1.S1_at2/119+21577085..21577429hypothetical protein
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed
LOC_Os09g37420OsAffx.30169.1.S1_at1/119+21591758..21592348auxin induced protein, putative, expressed
LOC_Os09g37430OsAffx.30169.1.S1_at11/119+21593851..21594536auxin induced protein, putative
LOC_Os09g37440OsAffx.6505.1.S1_at11/119+21595723..21596157auxin induced protein, putative
LOC_Os09g37450OsAffx.30170.1.S1_at11/119+21598106..21598390hypothetical protein
LOC_Os09g37460OsAffx.18028.1.S1_at11/119+21599242..21599706auxin induced protein, putative, expressed
LOC_Os09g37470OsAffx.30169.1.S1_at1/119+21600648..21601248auxin induced protein, putative, expressed
LOC_Os09g37480Os.18493.1.S1_at11/119+21602448..21603061auxin induced protein, putative, expressed
LOC_Os09g37490Os.51408.1.S1_at11/119+21604182..21606542Auxin responsive protein
LOC_Os09g37500Os.50785.1.S1_at11/119+21608790..21609471auxin induced protein, putative, expressed
LOC_Os09g37510Os.48703.1.S1_at11/119+21609612..21612608expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6505.1.S1_at--729--4391Chr09:21595777..21595801 (25 bp)
GCCAAGGGAAGGAAGCGGCTTACAA
LOC_Os09g37440
OsAffx.6505.1.S1_at--857--4691Chr09:21595791..21595815 (25 bp)
GCGGCTTACAATGATGGCACCACAA
LOC_Os09g37440
OsAffx.6505.1.S1_at--576--5391Chr09:21595816..21595840 (25 bp)
GAAGCTGAAGGATGCTCAACAATGG
LOC_Os09g37440
OsAffx.6505.1.S1_at--629--2211Chr09:21595834..21595858 (25 bp)
ACAATGGTGGCAGGCAAGGGCTACT
LOC_Os09g37440
OsAffx.6505.1.S1_at--860--2871Chr09:21595849..21595873 (25 bp)
AAGGGCTACTGCATCGTATACACCG
LOC_Os09g37440
OsAffx.6505.1.S1_at--330--4971Chr09:21595859..21595883 (25 bp)
GCATCGTATACACCGCAGATGGCAT
LOC_Os09g37440
OsAffx.6505.1.S1_at--827--6851Chr09:21595887..21595911 (25 bp)
GTTTGAGGTGCCACTGCGGTACCTC
LOC_Os09g37440
OsAffx.6505.1.S1_at--1151--811Chr09:21595918..21595942 (25 bp)
ATGGTCTTCGGTGAGCTCCTGAGGA
LOC_Os09g37440
OsAffx.6505.1.S1_at--4--5911Chr09:21596070..21596094 (25 bp)
GAGCTCCATGGCGATTTCGTGCCAC
LOC_Os09g37440
OsAffx.6505.1.S1_at--403--6531Chr09:21596082..21596106 (25 bp)
GATTTCGTGCCACTATGCAAACAGT
LOC_Os09g37440
OsAffx.6505.1.S1_at--910--651Chr09:21596096..21596120 (25 bp)
ATGCAAACAGTACGACACCGTCTCT
LOC_Os09g37440
Target Sequence 
GCCAAGGGAAGGAAGCGGCTTACAATGATGGCACCACAAGAAGCTGAAGGATGCTCAACAATGGTGGCAGGCAAGGGCTA
CTGCATCGTATACACCGCAGATGGCATGCGGTTTGAGGTGCCACTGCGGTACCTCGGCACGATGGTCTTCGGTGAGCTCC
TGAGGATGTCACAGGAGGAGTTTGGCTTCACGAGTGATGGAAAGATCACATTACCATGTGATGCCATGGTGATGGAGTAC
GTGATGTGCTTACTTAGAAGAAATGCTTCAGTAGATGTTGAGAAGGCATTCTTGAGCTCCATGGCGATTTCGTGCCACTA
TGCAAACAGTACGACACCGTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis