Browse Element(s) Details


OsAffx.30201.1.S1_at

Description tigr:9637.m03345
TID=OsAffx.30201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cysteine proteinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3917011/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39150Os.47463.1.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39150Os.14491.2.S1_x_at5/119+22470497..22480343transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g39160OsAffx.30200.1.S1_at10/119+22487767..22489686Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30202.1.S1_x_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.30201.1.S1_at11/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170Os.51754.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39170OsAffx.6233.1.S1_at1/119+22491224..22493839Papain family cysteine protease containing protein
LOC_Os09g39180Os.47913.1.A1_at10/119+22504524..2250704528 kDa ribonucleoprotein, chloroplast, putative, expressed
LOC_Os09g39190OsAffx.30204.1.S1_at11/119+22507726..22512808Copine family protein, expressed
LOC_Os09g39200Os.47350.1.S1_at10/119+22513028..22516720expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30201.1.S1_at--155--1731Chr09:22491808..22491832 (25 bp)
ACCAGGCGCAGCAGTACATCGTCAA
LOC_Os09g39170
OsAffx.30201.1.S1_at--1091--6351Chr09:22491731..22491755 (25 bp)
GATGCCACGAAGCATCCGTGCAGAA
LOC_Os09g39170
OsAffx.30201.1.S1_at--999--2571Chr09:22491708..22491732 (25 bp)
AACGGTGGCAGGCAAACAACCCATC
LOC_Os09g39170
OsAffx.30201.1.S1_at--849--2191Chr09:22491693..22491717 (25 bp)
ACAACCCATCATCACGGTGGACGAT
LOC_Os09g39170
OsAffx.30201.1.S1_at--1005--4331Chr09:22491592..22491616 (25 bp)
CCAGCGGGTGGCAGTTCTACCAAGG
LOC_Os09g39170
OsAffx.30201.1.S1_at--355--8371Chr09:22491459..22491483 (25 bp)
GGCGTGTTCACTGGGCCTTGCCAAA
LOC_Os09g39170
OsAffx.30201.1.S1_at--1093--1771Chr09:22491430..22491451 (22 bp)
ACCGTTGAACCATGCTGTGCTGAAT
LOC_Os09g39170
OsAffx.30201.1.S1_at--986--7471Chr09:22491304..22491328 (25 bp)
GTGGGAACCCCAGATGGCCTATGTG
LOC_Os09g39170
OsAffx.30201.1.S1_at--898--1311Chr09:22491293..22491317 (25 bp)
AGATGGCCTATGTGGCATCGCCACG
LOC_Os09g39170
OsAffx.30201.1.S1_at--206--1851Chr09:22491271..22491295 (25 bp)
ACGCACGCCACATATCCTATAAAGA
LOC_Os09g39170
OsAffx.30201.1.S1_at--379--571Chr09:22491258..22491282 (25 bp)
ATCCTATAAAGAAGTGTCCCTGCCC
LOC_Os09g39170
Target Sequence 
ACCAGGCGCAGCAGTACATCGTCAAGAACGGGATCACCCTGGATCGGTGCGGGAAGGAACCGTACTACCCGGCCTACGAT
GCCACGAAGCATCCGTGCAGAACGGTGGCAGGCAAACAACCCATCATCACGGTGGACGATGTAAAGTGGGTGAACAAAAG
CGAGGCCGCCCTGCTGCTCAAAGTCTACCAGCAGCCCATCTCTGTGGCACTCGACGCCAGCGGGTGGCAGTTCTACCAAG
GGGGCGTGTTCACTGGGCCTTGCCAAACGCCACCACCGTTGAACCATGCTGTGCTGAATTCATGGGGCGCAAACTGGGCC
GAGAGCGGCTACATCCGCATGAAACGTGACGTGGGAACCCCAGATGGCCTATGTGGCATCGCCACGCACGCCACATATCC
TATAAAGAAGTGTCCCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis