Browse Element(s) Details


OsAffx.30260.1.S1_at

Description tigr:9638.m00271
TID=OsAffx.30260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0364010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03620Os.46552.1.S1_at9/1110+1546756..1549483F-box domain containing protein, expressed
LOC_Os10g03630NANA10+1558042..1558810hypothetical protein
LOC_Os10g03640OsAffx.30260.1.S1_at10/1110+1572006..1574645hypothetical protein
LOC_Os10g03650OsAffx.20775.1.S1_at10/1110+1579198..1582757expressed protein
LOC_Os10g03650Os.49478.1.S1_at1/1110+1579198..1582757expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30260.1.S1_at--875--5171Chr10:1574555..1574579 (25 bp)
GAATTGGAGGTCAGCGCACCCAACA
LOC_Os10g03640
OsAffx.30260.1.S1_at--979--4311Chr10:1574514..1574538 (25 bp)
CCATTGGAAGACGAGGTGCCTCCGT
LOC_Os10g03640
OsAffx.30260.1.S1_at--1114--8031Chr10:1573301..1573325 (25 bp)
GGAGTATAGGACTTTCCCTCATCAT
LOC_Os10g03640
OsAffx.30260.1.S1_at--856--3271Chr10:1572957..1572977 (21 bp)
CAAAAGTGTGCATCTCTGAGGGAAT
LOC_Os10g03640
OsAffx.30260.1.S1_at--721--8151Chr10:1572921..1572945 (25 bp)
GGAAACCTTGCTGGACGCCGACATC
LOC_Os10g03640
OsAffx.30260.1.S1_at--412--5811Chr10:1572908..1572932 (25 bp)
GACGCCGACATCATGATATCTCAGC
LOC_Os10g03640
OsAffx.30260.1.S1_at--901--8831Chr10:1572895..1572919 (25 bp)
TGATATCTCAGCTAGGGTTTTTTCT
LOC_Os10g03640
OsAffx.30260.1.S1_at--525--7671Chr10:1572881..1572905 (25 bp)
GGGTTTTTTCTGACAGCGCAGACAG
LOC_Os10g03640
OsAffx.30260.1.S1_at--779--10091Chr10:1572854..1572878 (25 bp)
TATGGCGTGACGTACTGCTCAACAA
LOC_Os10g03640
OsAffx.30260.1.S1_at--915--3051NONE
AATCTTACATCTTACTATGCTGCAG
NONE
OsAffx.30260.1.S1_at--136--3691Chr10:1572036..1572056 (21 bp)
CTATGCTGCAGAAAGCTGGTGCATT
LOC_Os10g03640
Target Sequence 
GAATTGGAGGTCAGCGCACCCAACAGCGTCGCCAAGATTTTCCATTGGAAGACGAGGTGCCTCCGTCTCCTGCCGCCGCC
CGTCGCGTCGACGCCTATGGCCACCACCCGCAGCGTCGATGCCTTCGGCTATCACCCGCCTCTCCGCAGCGCCCCCTACC
ACTACCCGCTCGCCACCACGCCCCCACATCACCCGCCGGGATCTACCATTGGGGGGGGGTTGGAGTATAGGACTTTCCCT
CATCATAGGCATGGGAGAGAAGAATTCGAGCAAAAGTGTGCATCTCTGAGGGAATGGATCACTTCTGGAAACCTTGCTGG
ACGCCGACATCATGATATCTCAGCTAGGGTTTTTTCTGACAGCGCAGACAGAATATGGCGTGACGTACTGCTCAACAAGG
AACTTAATCTTACATCTTACTATGCTGCAGAAAGCTGGTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis