Browse Element(s) Details


OsAffx.30273.1.S1_at

Description tigr:9638.m00335
TID=OsAffx.30273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0426011/11hypothetical protein
LOC_Os02g227601/11retrotransposon protein, putative, LINE subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04210OsAffx.18121.1.S1_at11/1110+1945918..1948038hypothetical protein
LOC_Os10g04220OsAffx.20354.1.S1_at1/1110+1952461..1954923retrotransposon protein, putative, unclassified
LOC_Os10g04230NANA10+1955253..1957921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04240NANA10+1958414..1961373retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g04250OsAffx.14826.1.S1_at1/1110+1964704..1967815Transposable element protein, putative, Retrotrans_gag
LOC_Os10g04260OsAffx.30273.1.S1_at11/1110+1971335..1973334hypothetical protein
LOC_Os10g04270Os.10358.1.A1_at11/1110+1982985..1983982Jacalin-like lectin domain containing protein, expressed
LOC_Os10g04280Os.23219.2.S1_x_at1/1110+1995147..1996028hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30273.1.S1_at--859--1351Chr10:1973277..1973301 (25 bp)
AGAGAGCAGGTCGAGGCTAGCCCAC
LOC_Os10g04260
OsAffx.30273.1.S1_at--1125--6191Chr10:1973265..1973289 (25 bp)
GAGGCTAGCCCACGCATCAGTGACA
LOC_Os10g04260
OsAffx.30273.1.S1_at--170--411Chr10:1973250..1973274 (25 bp)
ATCAGTGACACACGTCTACCACTTG
LOC_Os10g04260
OsAffx.30273.1.S1_at--1056--7111Chr10:1973237..1973261 (25 bp)
GTCTACCACTTGATCAAACCAACTT
LOC_Os10g04260
OsAffx.30273.1.S1_at--637--3191Chr10:1973207..1973231 (25 bp)
CAATGGTTGAGATCTTTCCAAAGTG
LOC_Os10g04260
OsAffx.30273.1.S1_at--85--6231Chr10:1973148..1973172 (25 bp)
GAGGCCATTAGGGATTCGGGCAACC
LOC_Os10g04260
OsAffx.30273.1.S1_at--44--1911Chr10:1973060..1973082 (23 bp)
ACGTGGCCCATCTTGGGTGGGTATA
LOC_Os10g04260
OsAffx.30273.1.S1_at--187--7694Chr10:1971643..1971666 (24 bp)
GGGTATACCATGAGGACCTTCGGCC
LOC_Os10g04260
OsAffx.30273.1.S1_at--12--2652Chr10:1971607..1971631 (25 bp)
AACCAAGGACCAGGCGAGGACTCAA
LOC_Os10g04260
OsAffx.30273.1.S1_at--1162--4331Chr10:1971523..1971547 (25 bp)
CCATGTGGCGAAAGTCGTGGCATGA
LOC_Os10g04260
OsAffx.30273.1.S1_at--984--5831Chr10:1971394..1971418 (25 bp)
GACCTCACTGGAGGAAGGCCCAGCA
LOC_Os10g04260
Target Sequence 
AGAGAGCAGGTCGAGGCTAGCCCACGCATCAGTGACACACGTCTACCACTTGATCAAACCAACTTAATATCAATGGTTGA
GATCTTTCCAAAGTGTGTTTGTTTGCATATAAGAAGTTGGAAGTCGGTGGAGGCCATTAGGGATTCGGGCAACCGCGTGG
AAGGGGTTGACCAATCCCCCTCCACTGAACTGCTTGGGCCACCCCCTCTGGCGGGGTGCACGTGGCCCATCTTGGGTGGG
TATACCATGAGGACCTTCGGCCGGGCCTACCGAAACCAAGGACCAGGCGAGGACTCAAGCCGGAGGCACGCGGCGAAGGC
CGAGAAGGTGTCCATGAGGAGACAACATGGGCGAAAGCCATGTGGCGAAAGTCGTGGCATGAAGCACATGGGCTTCGCCA
AAGATGGACCTTGTTCGAGGGCCATACGGGCGAAGACTGCGGGGCAAAAGCCTTGCCGCGAAGGGCACGGGTTTCACCAA
GAACCGGACCTCACTGGAGGAAGGCCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis