Browse Element(s) Details


OsAffx.30280.1.S1_x_at

Description tigr:9638.m00389
TID=OsAffx.30280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0479011/11hypothetical protein
LOC_Os02g211201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g279201/11retrotransposon protein, putative, unclassified
LOC_Os12g216001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g073301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g262301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g311601/11retrotransposon protein, putative, unclassified
LOC_Os03g265801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g030701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g098901/11retrotransposon protein, putative, unclassified
LOC_Os04g160101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04770OsAffx.20758.1.S1_at11/1110+2273167..2277200expressed protein
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed
LOC_Os10g04790OsAffx.30280.1.S1_x_at11/1110+2291947..2292198hypothetical protein
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein
LOC_Os10g04810OsAffx.31869.2.S1_at10/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.13933.1.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.5.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.4.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.3.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.1.S1_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30280.1.S1_x_at--287--3521Chr12:1626519..1626543 (25 bp)
ATAACTCAACTCAAAGCAGTGCACC
NONE
OsAffx.30280.1.S1_x_at--888--98125Chr12:1626520..1626543 (24 bp)
TAACTCAACTCAAAGCAGTGCACCA
NONE
OsAffx.30280.1.S1_x_at--1024--2532Chr10:2291979..2292003 (25 bp)
AACTCAACTCAAAGCAGTGCACCAT
LOC_Os10g04790
OsAffx.30280.1.S1_x_at--213--20110Chr12:9007530..9008035 (25 bp)
ACTCAACTCAAAGCAGTGCACCATT
NONE
OsAffx.30280.1.S1_x_at--137--37514Chr12:18514709..18514810 (25 bp)
CTCAACTCAAAGCAGTGCACCATTC
NONE
OsAffx.30280.1.S1_x_at--152--96919Chr12:18514792..18514811 (20 bp)
TCAACTCAAAGCAGTGCACCATTCC
NONE
OsAffx.30280.1.S1_x_at--316--9717Chr10:2291987..2292011 (25 bp)
TCAAAGCAGTGCACCATTCCCGGAT
LOC_Os10g04790
OsAffx.30280.1.S1_x_at--276--23516Chr12:13288127..13288147 (21 bp)
AAAGCAGTGCACCATTCCCGGATCA
NONE
OsAffx.30280.1.S1_x_at--1155--50117Chr12:13288127..13288150 (24 bp)
GCAGTGCACCATTCCCGGATCATAG
NONE
OsAffx.30280.1.S1_x_at--348--39514Chr12:1626549..1627065 (25 bp)
CGGATCATAGTCACCCCCTCAAAAA
NONE
OsAffx.30280.1.S1_x_at--455--1137Chr12:4230171..4230195 (25 bp)
CCCTCAAAAACCAGAGGCATGGACT
NONE
Target Sequence 
ATAACTCAACTCAAAGCAGTGCACCATTCCCGGATCATAGTCACCCCCTCAAAAACCAGAGGCATGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30280.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis