Browse Element(s) Details


OsAffx.30282.1.S1_at

Description tigr:9638.m00394
TID=OsAffx.30282.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein
LOC_Os10g04810OsAffx.31869.2.S1_at10/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.13933.1.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.5.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.4.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.3.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.1.S1_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04840OsAffx.30282.1.S1_at11/1110+2323745..2324838hypothetical protein
LOC_Os10g04850OsAffx.20756.1.S1_at11/1110+2334552..2338653F-box domain containing protein
LOC_Os10g04860Os.8217.1.S1_at11/1110+2343001..2352865Aldehyde oxidase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30282.1.S1_at--17--5451Chr10:2323832..2323856 (25 bp)
GAACCCGCCGGGAATAGCCACGGCG
LOC_Os10g04840
OsAffx.30282.1.S1_at--496--3311Chr10:2323881..2323905 (25 bp)
CACACGATGAGCCTGCGCTGAGAAT
LOC_Os10g04840
OsAffx.30282.1.S1_at--900--8911Chr10:2323888..2323912 (25 bp)
TGAGCCTGCGCTGAGAATAGCGGCA
LOC_Os10g04840
OsAffx.30282.1.S1_at--196--10011Chr10:2323905..2323929 (25 bp)
TAGCGGCAGGTGTTGACGTGGACAA
LOC_Os10g04840
OsAffx.30282.1.S1_at--71--8471Chr10:2323941..2323965 (25 bp)
TGGCGGACTCCCAGCAAGTCGTTGA
LOC_Os10g04840
OsAffx.30282.1.S1_at--1061--1991Chr10:2323947..2323971 (25 bp)
ACTCCCAGCAAGTCGTTGAGGTCGT
LOC_Os10g04840
OsAffx.30282.1.S1_at--92--10832Chr10:2323977..2324001 (25 bp)
TTGTCGAGCCGCCAGGAGAAGCGCG
LOC_Os10g04840
OsAffx.30282.1.S1_at--28--10091Chr10:2324049..2324073 (25 bp)
TAGGCGCAGACCTGGATGACGCCGA
LOC_Os10g04840
OsAffx.30282.1.S1_at--1020--2311Chr10:2324553..2324577 (25 bp)
AAAGGTGTGCACCATCTGGGTTGCA
LOC_Os10g04840
OsAffx.30282.1.S1_at--305--5091Chr10:2324561..2324585 (25 bp)
GCACCATCTGGGTTGCACAGAGAAA
LOC_Os10g04840
OsAffx.30282.1.S1_at--366--1351Chr10:2324782..2324806 (25 bp)
AGAGACGAAGACACTTTCGGCGTGT
LOC_Os10g04840
Target Sequence 
GAACCCGCCGGGAATAGCCACGGCGCGGCGGTCGCCGGCGACGGGGTCCCACACGATGAGCCTGCGCTGAGAATAGCGGC
AGGTGTTGACGTGGACAAGGGCGCGGCCGTGGCGGACTCCCAGCAAGTCGTTGAGGTCGTGGCGGTTGTCGAGCCGCCAG
GAGAAGCGCGCGGCGGGGATCCGGTCCGGCGGGTCCAGCGCGGGGGCGAAGATGGGGTAGGCGCAGACCTGGATGACGCC
GAGGAGGGGAGGCTTGCGGTGGCGGGCGCGGAAGCGGCGGAGGAAGCCGCGGTCGGAGACGAGGCGGCGCCAGCGGGTGC
AGACGAGGGAGGCGCGGGGGAGGGAGGATGGCAGCGGCGGGAGGCGGAGGAGGATCTCGGAGAGGAGGGGTTTGAGGATA
GAAAAAAGGTGTGCACCATCTGGGTTGCACAGAGAAAACATTCATTATTAGAAAGAAACGAGGATATTTTCGAAAGAGAC
GAAGACACTTTCGGCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis