Browse Element(s) Details


OsAffx.30308.1.S1_at

Description tigr:9638.m00515
TID=OsAffx.30308.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0602011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06000Os.8385.2.S1_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8385.2.S1_x_at11/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.37820.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06000Os.8018.1.S1_x_at1/1110+3015765..3016868proline-rich protein, putative, expressed
LOC_Os10g06010OsAffx.20745.1.S1_at11/1110+3030618..3034372retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06020OsAffx.30308.1.S1_at11/1110+3037734..3038419hypothetical protein
LOC_Os10g06030OsAffx.20742.3.S1_x_at11/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.4.S1_x_at9/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.2.S1_x_at8/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.29386.2.S1_at1/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30308.1.S1_at--885--1491Chr10:3038066..3038090 (25 bp)
AGCACCTATAATGCTGACTTGCATG
LOC_Os10g06020
OsAffx.30308.1.S1_at--373--9771Chr10:3038058..3038082 (25 bp)
TAATGCTGACTTGCATGTGTCCTTT
LOC_Os10g06020
OsAffx.30308.1.S1_at--519--9111Chr10:3038055..3038079 (25 bp)
TGCTGACTTGCATGTGTCCTTTTAG
LOC_Os10g06020
OsAffx.30308.1.S1_at--126--1191Chr10:3037866..3037890 (25 bp)
AGTAGAAGTATATTTGCCGGCTATC
LOC_Os10g06020
OsAffx.30308.1.S1_at--1089--1451Chr10:3037863..3037887 (25 bp)
AGAAGTATATTTGCCGGCTATCAAG
LOC_Os10g06020
OsAffx.30308.1.S1_at--290--8871Chr10:3037821..3037845 (25 bp)
TGAGGGTAGTAACTCCCCTCAACCT
LOC_Os10g06020
OsAffx.30308.1.S1_at--212--9331Chr10:3037803..3037827 (25 bp)
TCAACCTTCGGTCACTAAGCCAAGA
LOC_Os10g06020
OsAffx.30308.1.S1_at--474--10611Chr10:3037797..3037821 (25 bp)
TTCGGTCACTAAGCCAAGAGGATCT
LOC_Os10g06020
OsAffx.30308.1.S1_at--819--4391Chr10:3037785..3037809 (25 bp)
GCCAAGAGGATCTAGCGACTCCGTA
LOC_Os10g06020
OsAffx.30308.1.S1_at--147--1331Chr10:3037781..3037805 (25 bp)
AGAGGATCTAGCGACTCCGTAGGGA
LOC_Os10g06020
OsAffx.30308.1.S1_at--132--6411Chr10:3037777..3037801 (25 bp)
GATCTAGCGACTCCGTAGGGAGAAT
LOC_Os10g06020
Target Sequence 
AGCACCTATAATGCTGACTTGCATGTGTCCTTTTAGTAGTATGTTTTATATGATAATAGTAGAAGTATATTTGCCGGCTA
TCAAGGGGGAGGCCGGGAAGTTTGAGGGTAGTAACTCCCCTCAACCTTCGGTCACTAAGCCAAGAGGATCTAGCGACTCC
GTAGGGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis