Browse Element(s) Details


OsAffx.30441.1.S1_at

Description tigr:9638.m01483
TID=OsAffx.30441.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1789011/11wall-associated kinase 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17820Os.27691.1.S1_x_at1/1110+8682754..8688484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17830NANA10+8693742..8694443hypothetical protein
LOC_Os10g17840NANA10+8696460..8697957retrotransposon protein, putative, unclassified
LOC_Os10g17850OsAffx.22699.1.S1_x_at2/1110+8698669..8700249retrotransposon protein, putative, unclassified
LOC_Os10g17860Os.52731.1.S1_at1/1110+8700620..8701924retrotransposon protein, putative, unclassified
LOC_Os10g17870NANA10+8702326..8705512hypothetical protein
LOC_Os10g17880OsAffx.6686.1.S1_at9/1110+8707240..8709014hypothetical protein
LOC_Os10g17890OsAffx.30441.1.S1_at11/1110+8710622..8711533wall-associated kinase 3, putative
LOC_Os10g17900Os.9523.1.S1_at1/1110+8713170..8720349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17910OsAffx.18277.1.S1_at11/1110+8724773..8726138Protein kinase domain containing protein
LOC_Os10g17920OsAffx.20540.1.S1_at11/1110+8728705..8730287retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17930Os.46855.1.S1_at11/1110+8731422..8733068F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30441.1.S1_at--67--2471Chr10:8711003..8711027 (25 bp)
AACACCCACAACATGCTGGTCGTGC
LOC_Os10g17890
OsAffx.30441.1.S1_at--203--1791Chr10:8711039..8711063 (25 bp)
ACCGTCGGCTACACTGAGAGCTTGA
LOC_Os10g17890
OsAffx.30441.1.S1_at--941--1491Chr10:8711087..8711111 (25 bp)
AGCACATACTACATCGGCTGCATGT
LOC_Os10g17890
OsAffx.30441.1.S1_at--866--771Chr10:8711108..8711132 (25 bp)
ATGTCCTACTGCAACAACTCGGCGA
LOC_Os10g17890
OsAffx.30441.1.S1_at--380--7091Chr10:8711207..8711231 (25 bp)
GTCAACTTCCGGGTGTACGACCACA
LOC_Os10g17890
OsAffx.30441.1.S1_at--803--6911Chr10:8711235..8711259 (25 bp)
GTATGGTGGACTACAGCCCCTGTGA
LOC_Os10g17890
OsAffx.30441.1.S1_at--691--3911Chr10:8711330..8711354 (25 bp)
CGGAACGTTCCGGTGTGGCTTGACT
LOC_Os10g17890
OsAffx.30441.1.S1_at--709--8231Chr10:8711399..8711423 (25 bp)
GGCAAGCCAGGGTACGCCTGTGTCA
LOC_Os10g17890
OsAffx.30441.1.S1_at--587--1131Chr10:8711436..8711460 (25 bp)
AGTGCGTCGACTCTACTAATGGTCC
LOC_Os10g17890
OsAffx.30441.1.S1_at--1041--2931Chr10:8711453..8711477 (25 bp)
AATGGTCCGGGTTACAACTGCAAGT
LOC_Os10g17890
OsAffx.30441.1.S1_at--259--2871Chr10:8711474..8711498 (25 bp)
AAGTGTACCGCAGGCTACGAGGGAA
LOC_Os10g17890
Target Sequence 
AACACCCACAACATGCTGGTCGTGCTCGGCTGCAACACCGTCGGCTACACTGAGAGCTTGAGGAGCGAGGGAGGCGCCTA
CTCCAGCACATACTACATCGGCTGCATGTCCTACTGCAACAACTCGGCGAGCGCGCAGGACGGCCAGTGCGCCGGCGTCG
GCTGCTGCCACGTCGACATCCCACCGGGGCTCACCGACAGCTCCGTCAACTTCCGGGTGTACGACCACACCGGTATGGTG
GACTACAGCCCCTGTGACTACGCCTTCCTCACCGACCGGACCAACTACAGCTTCCGGCGAGCCGACCTCATCAAGATGGA
CAAGAACCGGAACGTTCCGGTGTGGCTTGACTGGGCGATCCGCGAGAACGGCTCCATGTCCTGCGCTGAGGCCAAGGGCA
AGCCAGGGTACGCCTGTGTCAGCGTCCACAGCGAGTGCGTCGACTCTACTAATGGTCCGGGTTACAACTGCAAGTGTACC
GCAGGCTACGAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis