Browse Element(s) Details


OsAffx.30458.1.S1_x_at

Description tigr:9638.m01661
TID=OsAffx.30458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2016011/11D-mannose binding lectin family protein
LOC_Os10g201203/11D-mannose binding lectin family protein, expressed
LOC_Os01g149321/11NAK-like ser/thr protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein
LOC_Os10g20120OsAffx.30458.2.S1_at11/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20120OsAffx.30458.1.S1_x_at3/1110+9770391..9772793D-mannose binding lectin family protein, expressed
LOC_Os10g20139OsAffx.30457.3.S1_s_at11/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20139OsAffx.30457.1.S1_s_at10/1110+9776422..9781090transposon protein, putative, unclassified
LOC_Os10g20160OsAffx.30458.1.S1_x_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20160OsAffx.30458.1.S1_at11/1110+9789099..9791522D-mannose binding lectin family protein
LOC_Os10g20170Os.47999.3.S1_x_at5/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.20691.1.S1_x_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20170OsAffx.21161.1.S1_at1/1110+9793803..9799972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20180NANA10+9800399..9802398transposon protein, putative, unclassified
LOC_Os10g20190Os.45173.5.S1_x_at4/1110+9805577..9811053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20200Os.47999.3.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20200OsAffx.10020.1.S1_x_at1/1110+9813435..9814859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20210NANA10+9815777..9816467hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30458.1.S1_x_at--677--10691Chr10:9789667..9789691 (25 bp)
TTGCCTACTTGCATGATAGCTGTCG
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--835--6471Chr10:9789653..9789677 (25 bp)
GATAGCTGTCGAGATTGCATTATAC
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--496--2051Chr10:9789603..9789627 (25 bp)
ACTTCTCAATGAATCTTTCGTTCCT
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--742--5231Chr10:9789593..9789617 (25 bp)
GAATCTTTCGTTCCTAAAATTGCTG
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--523--2591Chr10:9789507..9789531 (25 bp)
AACGATTGGATATCTTGCCCCTGAA
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--621--991Chr10:9789376..9789400 (25 bp)
AGGATGGTGACCATTCGGCCTATTT
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--754--10591Chr10:9789363..9789387 (25 bp)
TTCGGCCTATTTTCCAATGCAAGTC
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--1083--9331Chr10:9789340..9789364 (25 bp)
TCGCCCGCCAGCTTATCAATGGAGG
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--265--2233Chr10:9789203..9789227 (25 bp)
ACAATGGGCGAGGTGGTGCAATTCC
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--655--7012Chr10:9789170..9789194 (25 bp)
GTACTAGAACTCAAAATGCCACCAT
LOC_Os10g20160
OsAffx.30458.1.S1_x_at--971--9192Chr10:9789154..9789178 (25 bp)
TGCCACCATTGCCAAGACTACTGAA
LOC_Os10g20160
Target Sequence 
TTGCCTACTTGCATGATAGCTGTCGAGATTGCATTATACATTGTGATATCAAGCCAGAGAACATACTTCTCAATGAATCT
TTCGTTCCTAAAATTGCTGATTTTGGAATGGCAAAGATTTTGGGGAGAGAATTTAGTCATGCTCTGACTACAATGAGAGG
AACGATTGGATATCTTGCCCCTGAATGGATTAGCGGAACAGTTGTTACAGCTAAAGTTGATGTTTACAGCTATGGAATGG
TTTTGTTTGAAATCTTATCAGGAAGGAGGAACTCAAGTCAAGAATATTTCAAGGATGGTGACCATTCGGCCTATTTTCCA
ATGCAAGTCGCCCGCCAGCTTATCAATGGAGGGATTGGAAATCTGGTGGATGCAAAATTGCATGGTGATGTGAATCTCGA
GGAGGCTGAAAGAGTTTGCAAAATTGCATGTTGGTGTATTCAAGACAGTGAGTTTGATCGACCAACAATGGGCGAGGTGG
TGCAATTCCTAGAGGGTGTACTAGAACTCAAAATGCCACCATTGCCAAGACTACTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30458.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis