Browse Element(s) Details


OsAffx.30472.1.S1_at

Description tigr:9638.m01764
TID=OsAffx.30472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21150NANA10+10439035..10439848hypothetical protein
LOC_Os10g21160OsAffx.18325.1.S1_at10/1110+10448354..10448969hypothetical protein
LOC_Os10g21160OsAffx.30891.1.S1_x_at2/1110+10448354..10448969hypothetical protein
LOC_Os10g21170OsAffx.18326.1.S1_at11/1110+10452302..10452694hypothetical protein
LOC_Os10g21180OsAffx.30472.1.S1_at11/1110+10455384..10455695hypothetical protein
LOC_Os10g21190NANA10+10457616..10459725hypothetical protein
LOC_Os10g21200Os.46404.1.S1_x_at11/1110+10475878..10476987Photosystem Q, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30472.1.S1_at--1031--2511Chr10:10455414..10455438 (25 bp)
AACTACCTTGGACTCAGGGATTGGG
LOC_Os10g21180
OsAffx.30472.1.S1_at--629--4011Chr10:10455446..10455470 (25 bp)
CGTCGCCAACGACGTGATGATGCAG
LOC_Os10g21180
OsAffx.30472.1.S1_at--737--8891Chr10:10455472..10455496 (25 bp)
TGAGCCGAAGGGAGAATTCCTCCAC
LOC_Os10g21180
OsAffx.30472.1.S1_at--591--91Chr10:10455487..10455511 (25 bp)
ATTCCTCCACGGTTGAACTCGATGA
LOC_Os10g21180
OsAffx.30472.1.S1_at--380--2551Chr10:10455502..10455526 (25 bp)
AACTCGATGAAGTTGTACTGCCACT
LOC_Os10g21180
OsAffx.30472.1.S1_at--991--2811Chr10:10455511..10455535 (25 bp)
AAGTTGTACTGCCACTTCAGCTATT
LOC_Os10g21180
OsAffx.30472.1.S1_at--552--2051Chr10:10455524..10455548 (25 bp)
ACTTCAGCTATTGCGCCTTGGACTT
LOC_Os10g21180
OsAffx.30472.1.S1_at--957--10851Chr10:10455541..10455565 (25 bp)
TTGGACTTCCGCACGTGATCGACTT
LOC_Os10g21180
OsAffx.30472.1.S1_at--998--4211Chr10:10455549..10455573 (25 bp)
CCGCACGTGATCGACTTGGCTCTGA
LOC_Os10g21180
OsAffx.30472.1.S1_at--272--731Chr10:10455580..10455604 (25 bp)
ATGTTTACCGGTCATACTTGATCCC
LOC_Os10g21180
OsAffx.30472.1.S1_at--619--7131Chr10:10455590..10455614 (25 bp)
GTCATACTTGATCCCGGTTTCCCTT
LOC_Os10g21180
Target Sequence 
AACTACCTTGGACTCAGGGATTGGGGCCTGAGCGTCGCCAACGACGTGATGATGCAGCTGAGCCGAAGGGAGAATTCCTC
CACGGTTGAACTCGATGAAGTTGTACTGCCACTTCAGCTATTGCGCCTTGGACTTCCGCACGTGATCGACTTGGCTCTGA
TACCAAATGTTTACCGGTCATACTTGATCCCGGTTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis