Browse Element(s) Details


OsAffx.30475.5.S1_x_at

Description tigr:9640.m00996
TID=OsAffx.30475.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F1, beta subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1057011/11ATP synthase beta chain, putative
LOC_Os03g5587410/11ATP synthase beta chain, putative
LOC_Os10g212709/11ATP synthase beta chain, putative, expressed
LOC_Os06g397409/11ATP synthase beta chain, putative
LOC_Os05g353209/11ATP synthase beta chain, putative
LOC_Os06g029804/11ATP synthase F1, epsilon subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g10560Os.9377.1.S1_at11/1112+5601182..5605132Clathrin coat assembly protein AP17, putative, expressed
LOC_Os12g10570OsAffx.30475.5.S1_x_at11/1112+5611052..5612326ATP synthase beta chain, putative
LOC_Os12g10580OsAffx.26050.2.S2_x_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.26050.37.S1_s_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32219.1.S1_x_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32220.1.S1_s_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30475.5.S1_x_at--63--2917Chr06:23589136..23589160 (25 bp)
AAGGTAGCTCTAGTCTATGGCCAAA
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--93--5459Chr06:23589166..23589190 (25 bp)
GAACCGCCAGGAGCTCGTATGAGAG
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--226--8917Chr06:23589185..23589209 (25 bp)
TGAGAGTTGGTTTGACTGCCCTAAC
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--732--5178Chr06:23589240..23589264 (25 bp)
GCAAGACGTGCTTCTATTCATCGAT
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--291--5279Chr06:23589317..23589341 (25 bp)
GAATGCCCTCTGCAGTGGGTTATCA
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--1126--7671Chr12:5611415..5611439 (25 bp)
GGGTTATCAGCCTACTCTTAGTACA
LOC_Os12g10570
OsAffx.30475.5.S1_x_at--776--439Chr06:23589402..23589426 (25 bp)
ATCTATAACTTCGATCCAAGCGGTT
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--171--9117Chr01:42048976..42049000 (25 bp)
TGCTCCTGCTACAACATTTGCACAT
NONE
OsAffx.30475.5.S1_x_at--823--9078Chr06:23589486..23589510 (25 bp)
TGCTACTACCGTACTTTCCAGAGGA
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--1122--6536Chr06:23589525..23589549 (25 bp)
GATTTATCCTGCAGTAGATCCTTTA
LOC_Os06g39740
OsAffx.30475.5.S1_x_at--587--9838Chr06:23589569..23589593 (25 bp)
TACAACCTCGGATCGTTGGCAACGA
LOC_Os06g39740
Target Sequence 
AAGGTAGCTCTAGTCTATGGCCAAATGAATGAACCGCCAGGAGCTCGTATGAGAGTTGGTTTGACTGCCCTAACTATGGC
AGAATATTTCCGAGATGTTAATAAGCAAGACGTGCTTCTATTCATCGATAATATCTTTCGTTTTGTTCAAGCAGGATCGG
AGGTATCTTCCTTATTAGGGAGAATGCCCTCTGCAGTGGGTTATCAGCCTACTCTTAGTACAGAAATGGGTTCTTTGCAA
GAAAGAATTACTTCTACTAAAAAGGGATCTATAACTTCGATCCAAGCGGTTTATGTACATGCGGACGATTTGACCGACCC
TGCTCCTGCTACAACATTTGCACATTTGGATGCTACTACCGTACTTTCCAGAGGATTAGCTTCCAAAGGGATTTATCCTG
CAGTAGATCCTTTAGATTCAACCTCAACTATGTTACAACCTCGGATCGTTGGCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30475.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis