Browse Element(s) Details


OsAffx.30478.1.S1_at

Description gb:NM_196002.1
DB_XREF= gi:37533363
TID=OsAffx.30478.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0022D10.7), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2139011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21350OsAffx.242.1.S1_at11/1110+10590023..10594592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21360Os.15305.1.S1_at11/1110+10600802..10607988N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os10g21380OsAffx.20464.1.S1_at11/1110+10611540..10613605retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21390OsAffx.30478.1.S1_at11/1110+10613944..10615648hypothetical protein
LOC_Os10g21390OsAffx.4262.1.S1_at1/1110+10613944..10615648hypothetical protein
LOC_Os10g21400OsAffx.30479.1.S1_at11/1110+10624968..10627769NB-ARC domain containing protein, expressed
LOC_Os10g21410NANA10+10633568..10635640hypothetical protein
LOC_Os10g21420NANA10+10637912..10639326retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30478.1.S1_at--835--1671Chr10:10614026..10614050 (25 bp)
AGCCGGCTTTGTTTGCGGTGAAGTC
LOC_Os10g21390
OsAffx.30478.1.S1_at--447--5311Chr10:10614051..10614075 (25 bp)
GAAGGAGCCGCAGTGGAATGCCACA
LOC_Os10g21390
OsAffx.30478.1.S1_at--171--2691Chr10:10614085..10614109 (25 bp)
AAGCGGAGTGCCTGGGTGCAACCCA
LOC_Os10g21390
OsAffx.30478.1.S1_at--131--7591Chr10:10614118..10614142 (25 bp)
GGGCTCGCCTGGACTAGTTCGCTAA
LOC_Os10g21390
OsAffx.30478.1.S1_at--722--7811Chr10:10614128..10614152 (25 bp)
GGACTAGTTCGCTAACGTCGTTGGT
LOC_Os10g21390
OsAffx.30478.1.S1_at--964--4111Chr10:10614137..10614161 (25 bp)
CGCTAACGTCGTTGGTGACAAACAT
LOC_Os10g21390
OsAffx.30478.1.S1_at--84--8971Chr10:10614152..10614176 (25 bp)
TGACAAACATGGAGGAGCCGAAGAT
LOC_Os10g21390
OsAffx.30478.1.S1_at--125--7511Chr10:10614202..10614623 (25 bp)
GTGGTCGTCATGAAGGCACTCGGCC
LOC_Os10g21390
OsAffx.30478.1.S1_at--739--4371Chr10:10614642..10614715 (25 bp)
CCAAAGGCCTCTCCTCAGAAGAGGA
LOC_Os10g21390
OsAffx.30478.1.S1_at--577--931Chr10:10614763..10614787 (25 bp)
AGGAATCATTGCCACACCTGTGTGA
LOC_Os10g21390
OsAffx.30478.1.S1_at--734--5171Chr10:10614830..10614854 (25 bp)
GCAAGAGTTCTTGCTCATTCGTGAG
LOC_Os10g21390
Target Sequence 
AGCCGGCTTTGTTTGCGGTGAAGTCGAAGGAGCCGCAGTGGAATGCCACACCTGCGGGGAAGCGGAGTGCCTGGGTGCAA
CCCATCATGCTGGGGCTCGCCTGGACTAGTTCGCTAACGTCGTTGGTGACAAACATGGAGGAGCCGAAGATGATGAGAGT
GGTGGAGGGGAATGTGGTGGTCGTCATGAAGGCACTCGGCCCATCCCATGTCATGCAGCCCAAAGGCCTCTCCTCAGAAG
AGGAGGTTGATGATGAGGTTATGGATGATTACTTGTTCAAGTCCATAACCAAGGAATCATTGCCACACCTGTGTGAGTTG
TTTGAGAAAATTGAACAACAATATGCAACTCTTGAGAGGCAAGAGTTCTTGCTCATTCGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis