Browse Element(s) Details


OsAffx.30479.1.S1_at

Description tigr:9638.m01786
TID=OsAffx.30479.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistant protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2140011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21360Os.15305.1.S1_at11/1110+10600802..10607988N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os10g21380OsAffx.20464.1.S1_at11/1110+10611540..10613605retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21390OsAffx.30478.1.S1_at11/1110+10613944..10615648hypothetical protein
LOC_Os10g21390OsAffx.4262.1.S1_at1/1110+10613944..10615648hypothetical protein
LOC_Os10g21400OsAffx.30479.1.S1_at11/1110+10624968..10627769NB-ARC domain containing protein, expressed
LOC_Os10g21410NANA10+10633568..10635640hypothetical protein
LOC_Os10g21420NANA10+10637912..10639326retrotransposon, putative, centromere-specific
LOC_Os10g21430Os.52238.1.S1_at3/1110+10643508..10644154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21440NANA10+10649013..10649660retrotransposon, putative, centromere-specific
LOC_Os10g21450NANA10+10651885..10653451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30479.1.S1_at--190--3171Chr10:10627240..10627264 (25 bp)
AATTGGATGGTCTAAACCCGCTGCC
LOC_Os10g21400
OsAffx.30479.1.S1_at--1128--9071Chr10:10627261..10627285 (25 bp)
TGCCTCCAAACCTTCGAAAGCTTAA
LOC_Os10g21400
OsAffx.30479.1.S1_at--499--731Chr10:10627314..10627338 (25 bp)
ATGTTGTTGGGTTCACCTGCAGCAG
LOC_Os10g21400
OsAffx.30479.1.S1_at--204--131Chr10:10627363..10627387 (25 bp)
ATTCAGTGCATCTATCGTGGTCTCA
LOC_Os10g21400
OsAffx.30479.1.S1_at--179--9311Chr10:10627410..10627434 (25 bp)
TCCCTCTCTAGGTGGTCAAGTCTGA
LOC_Os10g21400
OsAffx.30479.1.S1_at--232--5911Chr10:10627467..10627491 (25 bp)
GAGCAGTTTGTCTTCCACCAAGGGT
LOC_Os10g21400
OsAffx.30479.1.S1_at--1028--591Chr10:10627527..10627551 (25 bp)
ATGCCTGATCTGAAGCGCCTGGAAA
LOC_Os10g21400
OsAffx.30479.1.S1_at--704--6251Chr10:10627557..10627581 (25 bp)
GATGGTGCCATGACAAGCCTGCAAG
LOC_Os10g21400
OsAffx.30479.1.S1_at--989--2531Chr10:10627586..10627610 (25 bp)
AACTCTTGTTAACCTCAGTGGCTTG
LOC_Os10g21400
OsAffx.30479.1.S1_at--737--1331Chr10:10627613..10627637 (25 bp)
AGAGGTTCCATCTGGCATCGAGTTA
LOC_Os10g21400
OsAffx.30479.1.S1_at--942--3391Chr10:10627690..10627714 (25 bp)
CAGCTTTGCGCCAATGCCATAGAAT
LOC_Os10g21400
Target Sequence 
AATTGGATGGTCTAAACCCGCTGCCTCCAAACCTTCGAAAGCTTAACTTGCGTGGGATACTGGCAGAAGCAGGCATGTTG
TTGGGTTCACCTGCAGCAGGAGATCAAAATAACCACTCGTTGTATTCAGTGCATCTATCGTGGTCTCAGCTGATAGAGGA
CCCACTGCCATCCCTCTCTAGGTGGTCAAGTCTGACGGACCTAATGTTGACAAGAGCATATGTTGGGGAGCAGTTTGTCT
TCCACCAAGGGTGGTTTCCCAACCTCAAGGAACTCGTTTTAAGGGACATGCCTGATCTGAAGCGCCTGGAAATACACGAT
GGTGCCATGACAAGCCTGCAAGATCTAACTCTTGTTAACCTCAGTGGCTTGACAGAGGTTCCATCTGGCATCGAGTTACT
TTCCACCCTCAAAAACCTGGGCTTTTGGGAGATCACCCAAGACTTCCTTGCAGCTTTGCGCCAATGCCATAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis