Browse Element(s) Details


OsAffx.30487.1.S1_at

Description tigr:9638.m01823
TID=OsAffx.30487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2174011/11hypothetical protein
LOC_Os05g229003/11retrotransposon protein, putative, LINE subclass
LOC_Os05g238103/11retrotransposon protein, putative, unclassified
LOC_Os11g207601/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21720OsAffx.6724.2.S1_s_at11/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.1.S1_at9/1110+10815682..10818181hypothetical protein
LOC_Os10g21720OsAffx.6724.2.S1_at2/1110+10815682..10818181hypothetical protein
LOC_Os10g21730NANA10+10821625..10825275retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g21740OsAffx.30487.1.S1_at11/1110+10827099..10828556hypothetical protein
LOC_Os10g21760NANA10+10835850..10836164retrotransposon protein, putative, unclassified
LOC_Os10g21770OsAffx.30488.1.S1_at10/1110+10839169..10840342hypothetical protein
LOC_Os10g21780OsAffx.18336.1.S1_at11/1110+10841770..10842108hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30487.1.S1_at--940--6711Chr10:10827176..10827670 (25 bp)
GTTCTTAGGCCTTAATTTCAGGGAG
LOC_Os10g21740
OsAffx.30487.1.S1_at--513--191Chr10:10827660..10827684 (25 bp)
ATTTCAGGGAGATCTTGCTCTCCGG
LOC_Os10g21740
OsAffx.30487.1.S1_at--708--1071Chr10:10827665..10827689 (25 bp)
AGGGAGATCTTGCTCTCCGGACGCA
LOC_Os10g21740
OsAffx.30487.1.S1_at--635--4773Chr10:10827676..10827700 (25 bp)
GCTCTCCGGACGCAAATTTACTTGG
LOC_Os10g21740
OsAffx.30487.1.S1_at--8--8113Chr10:10827683..10827707 (25 bp)
GGACGCAAATTTACTTGGGCCAACT
LOC_Os10g21740
OsAffx.30487.1.S1_at--646--174Chr10:10827691..10827715 (25 bp)
ATTTACTTGGGCCAACTCTATGCCG
LOC_Os10g21740
OsAffx.30487.1.S1_at--224--9891Chr10:10827694..10827718 (25 bp)
TACTTGGGCCAACTCTATGCCGAGC
LOC_Os10g21740
OsAffx.30487.1.S1_at--776--10111Chr10:10827709..10827733 (25 bp)
TATGCCGAGCCCAACTTACAAAAAG
LOC_Os10g21740
OsAffx.30487.1.S1_at--1130--9171Chr10:10827711..10827735 (25 bp)
TGCCGAGCCCAACTTACAAAAAGTT
LOC_Os10g21740
OsAffx.30487.1.S1_at--94--8571Chr10:10828400..10828423 (24 bp)
TGGATGATATCCCTAAAGTGTCAAT
LOC_Os10g21740
OsAffx.30487.1.S1_at--674--231Chr10:10828405..10828429 (25 bp)
ATATCCCTAAAGTGTCAATGGAGGA
LOC_Os10g21740
Target Sequence 
GTTCTTAGGCCTTAATTTCAGGGAGATCTTGCTCTCCGGACGCAAATTTACTTGGGCCAACTCTATGCCGAGCCCAACTT
ACAAAAAGTTGGATAGAGTTTTGGATGATATCCCTAAAGTGTCAATGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis