Browse Element(s) Details


OsAffx.30613.1.S1_x_at

Description tigr:9638.m02638
TID=OsAffx.30613.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3068011/11hAT family dimerisation domain containing protein
LOC_Os02g1425011/11hAT family dimerisation domain containing protein
LOC_Os02g3217011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified
LOC_Os10g30670Os.52659.1.S1_at7/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30670Os.47371.1.S1_at4/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30613.1.S1_x_at--90--10574Chr02:18997852..18997876 (25 bp)
TTCTTCAAGTGTTGCCCCTCCAGGG
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--447--774Chr02:18997913..18997937 (25 bp)
ATGTCTGGACAAACTGTTGCCTCTT
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--1070--9574Chr02:18997934..18997958 (25 bp)
TCTTCCTCACAGATTCGCACTGAGT
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--489--5554Chr02:18997978..18998002 (25 bp)
GAAACCGTTGCCTAGGACACAAGAT
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--954--4934Chr02:18998034..18998058 (25 bp)
GCATTAGGTACCCAACTTTGAGACA
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--728--10234Chr02:18998050..18998074 (25 bp)
TTTGAGACAGATTGCCCGGGACATT
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--379--8134Chr02:18998068..18998092 (25 bp)
GGACATTTTGGCAATCCCTATTACA
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--1014--6114Chr02:18998128..18998152 (25 bp)
GAGGGTGATAACTCCAAATCGTAAT
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--466--2373Chr02:18998159..18998183 (25 bp)
AAACCTGATCTTGTGGAGGCACTTA
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--1081--7694Chr02:18998200..18998320 (25 bp)
GGGTCGTGCTGATATGTTAGCTGAA
LOC_Os02g32170
OsAffx.30613.1.S1_x_at--579--2994Chr02:18998336..18998360 (25 bp)
AATGCATTGAACACGGTACTTGACG
LOC_Os02g32170
Target Sequence 
TTCTTCAAGTGTTGCCCCTCCAGGGGGATTTGATTTGGTGGATGATATATTTGATCAGTATATGTCTGGACAAACTGTTG
CCTCTTCCTCACAGATTCGCACTGAGTTAGATTTGTATTTGGAAGAGAAACCGTTGCCTAGGACACAAGATTTTGATATT
ATCAATTGGTGGAAGTTTGGGGGCATTAGGTACCCAACTTTGAGACAGATTGCCCGGGACATTTTGGCAATCCCTATTAC
AACAGTAGCATCTGAATCAGCATTTAGTACTGGTGGGAGGGTGATAACTCCAAATCGTAATCAGCTTAAACCTGATCTTG
TGGAGGCACTTATGTGTGTGCAAGCATGGGGTCGTGCTGATATGTTAGCTGAAATTGCTAACAAGACCAATGCATTGAAC
ACGGTACTTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30613.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis