Browse Element(s) Details


OsAffx.8079.1.S1_at

Description tigr:9638.m02639
TID=OsAffx.8079.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3069011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30650NANA10+15625290..15628562transposon protein, putative, unclassified
LOC_Os10g30660NANA10+15629205..15635359retrotransposon protein, putative, unclassified
LOC_Os10g30670Os.52659.1.S1_at7/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30670Os.47371.1.S1_at4/1110+15639281..15640872transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g30680OsAffx.30613.1.S1_x_at11/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30680OsAffx.30613.3.S1_x_at10/1110+15647714..15651134hAT family dimerisation domain containing protein
LOC_Os10g30690OsAffx.8079.1.S1_at11/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.53952.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30690Os.8736.1.S1_at1/1110+15652941..15658420hypothetical protein
LOC_Os10g30700OsAffx.8078.1.S1_at11/1110+15660389..15661583hypothetical protein
LOC_Os10g30719OsAffx.18467.1.S1_s_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30719Os.46487.1.S1_at11/1110+15668228..15671424Myb-like DNA-binding domain containing protein, expressed
LOC_Os10g30740Os.35344.18.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740Os.35344.3.S1_x_at6/1110+15678546..15684596transposon protein, putative, Mutator sub-class
LOC_Os10g30740OsAffx.22940.5.S1_x_at2/1110+15678546..15684596transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8079.1.S1_at--568--5711Chr10:15653414..15653438 (25 bp)
GACTCTCCAGTTGCGTCGATAGGTT
LOC_Os10g30690
OsAffx.8079.1.S1_at--1046--10551Chr10:15654832..15654856 (25 bp)
TTCTTGCCGGCAGCTATGGAGGAGC
LOC_Os10g30690
OsAffx.8079.1.S1_at--227--271Chr10:15656783..15656807 (25 bp)
ATATGTTATATCTAGCCTGCGAAGG
LOC_Os10g30690
OsAffx.8079.1.S1_at--564--4471Chr10:15656797..15656821 (25 bp)
GCCTGCGAAGGCGAAATTCAACAAT
LOC_Os10g30690
OsAffx.8079.1.S1_at--77--9711Chr10:15656814..15656838 (25 bp)
TCAACAATTATTACAAGGGCCAAGA
LOC_Os10g30690
OsAffx.8079.1.S1_at--322--6871Chr10:15656861..15657118 (25 bp)
GTTTGGCAGATTTCATACCTAAGTA
LOC_Os10g30690
OsAffx.8079.1.S1_at--614--8651Chr10:15657141..15657165 (25 bp)
TGTGGCCGCAAGAGAAAACCATTTT
LOC_Os10g30690
OsAffx.8079.1.S1_at--1130--9351Chr10:15657895..15657919 (25 bp)
TCGGTTTGGAACCACTACAATTAGA
LOC_Os10g30690
OsAffx.8079.1.S1_at--1042--5991Chr10:15658024..15658048 (25 bp)
GAGAGACTTCTTCTCAACGTCTATT
LOC_Os10g30690
OsAffx.8079.1.S1_at--1007--3251Chr10:15658038..15658062 (25 bp)
CAACGTCTATTCGAACTGCTGTTCA
LOC_Os10g30690
OsAffx.8079.1.S1_at--502--2231Chr10:15658331..15658355 (25 bp)
ACAATGATACTGTCCCTTGATATGG
LOC_Os10g30690
Target Sequence 
GACTCTCCAGTTGCGTCGATAGGTTAATAGATAGGGACCGGCCGGAGCTGCTAGCTCTTCGCACCGCGGCGGCGGCGGCG
GCGTTGTTCTTGCCGGCAGCTATGGAGGAGCAGCCGGCTTCTGGGTGGAGGTGGGGTGTGATGGATGATATGTTATATCT
AGCCTGCGAAGGCGAAATTCAACAATTATTACAAGGGCCAAGAGATGAAACAGACATCTACAAATGTTTGGCAGATTTCA
TACCTAAGTATGGTAGTAGATGTGGCCGGCGATGTGGCCGCAAGAGAAAACCATTTTCGTTGAAACCACTTCGGTTTGGA
ACCACTACAATTAGAAGACATCATCTTAGAAAAAACAATGAACATTGGACATTCAAAGAAATAACTGAATTAGTAAAAGG
TGTTTCTAAGCATGGGGTTGGATCATGGACTAAGTTGAAGAGAGACTTCTTCTCAACGTCTATTCGAACTGCTGTTCATC
TGAAGGTAAAAGTACAAAAAACAATGATACTGTCCCTTGATATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis