Browse Element(s) Details


OsAffx.30640.1.S1_x_at

Description tigr:9638.m02814
TID=OsAffx.30640.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3240010/11PsbP family protein, expressed
LOC_Os10g3234810/11PsbP family protein, expressed
LOC_Os10g323001/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32300Os.19611.3.S1_at11/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32300OsAffx.30640.1.S1_x_at1/1110+16621510..16627595tetratricopeptide repeat, putative, expressed
LOC_Os10g32324OsAffx.30638.1.S1_at11/1110+16627846..16629231hypothetical protein
LOC_Os10g32348Os.19611.1.S1_a_at11/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_x_at10/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.30640.1.S1_at8/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32348OsAffx.17159.1.S1_x_at2/1110+16632246..16647440PsbP family protein, expressed
LOC_Os10g32372OsAffx.30638.1.S1_at11/1110+16647677..16649062hypothetical protein
LOC_Os10g32400OsAffx.30640.1.S1_x_at10/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.30640.1.S1_at8/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400Os.19611.1.S1_a_at6/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32400OsAffx.17159.1.S1_x_at2/1110+16652353..16661910PsbP family protein, expressed
LOC_Os10g32410Os.46500.2.S1_at7/1110+16664536..16665604transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g32420OsAffx.20272.1.S1_at7/1110+16669329..16669754hypothetical protein
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30640.1.S1_x_at--1038--4472Chr10:16661684..16661708 (25 bp)
GCCTGGCCTACCTGCAGCAGTACGA
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--735--4612Chr10:16661650..16661674 (25 bp)
GCGAGCTGCAGGTTTCACCGGTGTC
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--627--3472Chr10:16661642..16661666 (25 bp)
CAGGTTTCACCGGTGTCGCGGGCAC
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--566--7452Chr10:16661630..16661654 (25 bp)
GTGTCGCGGGCACCGTCTACGACAT
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--514--2112Chr10:16661609..16661633 (25 bp)
ACATGGTCGCCGCTATGCTTTCACC
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--629--631NONE
ATGCTTTCACCCATGCAATCTCTTA
NONE
OsAffx.30640.1.S1_x_at--737--7272Chr10:16660313..16660337 (25 bp)
GTGCACCCTTTACACGGAAACTTTG
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--655--2394Chr10:16660296..16660320 (25 bp)
AAACTTTGTGGCTTTAGTGCATGTT
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--723--7332Chr10:16660280..16660304 (25 bp)
GTGCATGTTTTTGCCAAGAATGATC
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--910--5272Chr10:16660263..16660287 (25 bp)
GAATGATCTTGCTACCAGGTGCATG
LOC_Os10g32400
OsAffx.30640.1.S1_x_at--1134--8532Chr10:16659977..16660047 (25 bp)
TGGAGAGGAAGGTAGCCCGCCCATT
LOC_Os10g32400
Target Sequence 
GCCTGGCCTACCTGCAGCAGTACGAGGAGCGCGCGCGAGCTGCAGGTTTCACCGGTGTCGCGGGCACCGTCTACGACATG
GTCGCCGCTATGCTTTCACCCATGCAATCTCTTAGAAGGGAGTTAAGTTCTGGGGTGCACCCTTTACACGGAAACTTTGT
GGCTTTAGTGCATGTTTTTGCCAAGAATGATCTTGCTACCAGGTGCATGGAGATTCTTGCTACTATGGAGAGGAAGGTAG
CCCGCCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30640.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis