Browse Element(s) Details


OsAffx.30716.1.S1_at

Description tigr:9638.m03509
TID=OsAffx.30716.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3896011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30716.1.S1_at--312--4171Chr10:20436065..20436089 (25 bp)
CGCCGGAGCTCACCGTGACGGGCAA
LOC_Os10g38960
OsAffx.30716.1.S1_at--879--2611Chr10:20436181..20436205 (25 bp)
AACCTGCTGCGCTGGGTCCGGGAGC
LOC_Os10g38960
OsAffx.30716.1.S1_at--208--9371Chr10:20436248..20436272 (25 bp)
TCGACGGGCGCTACGACAAGGAGGA
LOC_Os10g38960
OsAffx.30716.1.S1_at--654--4991Chr10:20436335..20436359 (25 bp)
GCATGAGGCAGGTCTGCCAGTACCT
LOC_Os10g38960
OsAffx.30716.1.S1_at--1005--5011Chr10:20436342..20436366 (25 bp)
GCAGGTCTGCCAGTACCTGGACGGC
LOC_Os10g38960
OsAffx.30716.1.S1_at--484--9571Chr10:20436398..20436422 (25 bp)
TCTTCTCCGACGTCGATTCCATCGA
LOC_Os10g38960
OsAffx.30716.1.S1_at--557--6571Chr10:20436412..20436436 (25 bp)
GATTCCATCGACTTCGGGTCGTTGA
LOC_Os10g38960
OsAffx.30716.1.S1_at--381--5671Chr10:20436421..20436445 (25 bp)
GACTTCGGGTCGTTGACGTCGCTGA
LOC_Os10g38960
OsAffx.30716.1.S1_at--225--10611Chr10:20436424..20436448 (25 bp)
TTCGGGTCGTTGACGTCGCTGACAT
LOC_Os10g38960
OsAffx.30716.1.S1_at--448--9391Chr10:20436430..20436454 (25 bp)
TCGTTGACGTCGCTGACATGGTCGT
LOC_Os10g38960
OsAffx.30716.1.S1_at--65--10751Chr10:20436433..20436457 (25 bp)
TTGACGTCGCTGACATGGTCGTCGT
LOC_Os10g38960
Target Sequence 
CGCCGGAGCTCACCGTGACGGGCAAGGCCACCACGGCCACCGACGTGTTCGCCTACGGCGCGCTGCTCCTCGAGGCGGCG
TGCGGGCGCCGCCCCATCGACCCGGCCACCGGCGTCAACCTGCTGCGCTGGGTCCGGGAGCACGGTGCCAGGGGCGAGCT
GGTGCACGCCGTCGACGAGAGGCTCGACGGGCGCTACGACAAGGAGGAGGCGAGGCTGGTGCTCTGGCTCGGCCTCGCGT
GCAGCCAGGCGAGGCCGGAGGCGCGGCCGAGCATGAGGCAGGTCTGCCAGTACCTGGACGGCGAGGAGGACGTACCGGAG
GAGGCCGTGCTCGTCTTCTCCGACGTCGATTCCATCGACTTCGGGTCGTTGACGTCGCTGACATGGTCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis