Browse Element(s) Details


OsAffx.30725.2.S1_at

Description gb:NM_188196.1
DB_XREF= gi:34903475
GEN=OSJNBa0066B06.20
TID=OsAffx.30725.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066B06.20 (OSJNBa0066B06.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2344010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23410Os.15112.1.S1_at9/117+13199366..13200849Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os07g23430Os.15139.1.S1_at9/117+13221598..13222864Omega-6 fatty acid desaturase, endoplasmic reticulum, putative, expressed
LOC_Os07g23440OsAffx.30725.2.S1_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440OsAffx.30725.2.S1_x_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.47463.1.S1_x_at6/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.14491.2.S1_x_at5/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.27037.1.A1_at1/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23450OsAffx.16380.1.S1_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23450OsAffx.16380.1.S1_x_at11/117+13244886..13245197Zinc finger, C2H2 type family protein
LOC_Os07g23460OsAffx.21754.1.S1_x_at2/117+13246980..13253052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23470OsAffx.28552.1.S1_at11/117+13255025..13256930Thaumatin family protein
LOC_Os07g23480NANA7+13259424..13269808retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30725.2.S1_at--18--4471Chr07:13235570..13235594 (25 bp)
GCCTGCACTGCTACCGAGGACGAGG
NONE
OsAffx.30725.2.S1_at--20--7491Chr07:13235431..13235455 (25 bp)
GTGGGTGGAGCGCACGGCGGGCAAG
LOC_Os07g23440
OsAffx.30725.2.S1_at--202--4611Chr07:13235391..13235415 (25 bp)
GCGACGGGTGAGAGAGCTCTTCCTA
LOC_Os07g23440
OsAffx.30725.2.S1_at--415--7391Chr07:13235384..13235408 (25 bp)
GTGAGAGAGCTCTTCCTACCACTGA
LOC_Os07g23440
OsAffx.30725.2.S1_at--315--6011Chr07:13235380..13235404 (25 bp)
GAGAGCTCTTCCTACCACTGATCAA
LOC_Os07g23440
OsAffx.30725.2.S1_at--1120--3711Chr07:13235369..13235393 (25 bp)
CTACCACTGATCAACGCGTGCCGGG
LOC_Os07g23440
OsAffx.30725.2.S1_at--915--7211Chr07:13235288..13235312 (25 bp)
GTCGACACGCTGCTTGACACCAACC
LOC_Os07g23440
OsAffx.30725.2.S1_at--1079--1791Chr07:13235174..13235198 (25 bp)
ACCGCGTTGCAGTGCATCATGGCTA
LOC_Os07g23440
OsAffx.30725.2.S1_at--698--4031Chr07:13235170..13235194 (25 bp)
CGTTGCAGTGCATCATGGCTAAGAT
LOC_Os07g23440
OsAffx.30725.2.S1_at--1156--851Chr07:13235156..13235180 (25 bp)
ATGGCTAAGATGGAAGGAGGTCACC
LOC_Os07g23440
OsAffx.30725.2.S1_at--619--4671Chr07:13235106..13235130 (25 bp)
GCGGGAGCAGCGGTCACTGGTGGAG
LOC_Os07g23440
Target Sequence 
GCCTGCACTGCTACCGAGGACGAGGGCGGTTGGATCCATGCGTCGGCGGCGCCTGTCTCCTCAGCCGCCACCGCTCCCGG
GGGTGTGGGGACGGCGGTGACGATGGCGCTCACGCGGAGGACGACGGGCGAGCGTGGGGGTGGGTGGAGCGCACGGCGGG
CAAGCGTGGCGGCGGATCGGCGACGGGTGAGAGAGCTCTTCCTACCACTGATCAACGCGTGCCGGGAGTACGAAACAAGG
CGGCGAGAGGAGAACAAAGAAACCATGTTGGAGCACTCGTACGTCGACACGCTGCTTGACACCAACCTCCCTGACGACGG
CAACCACGTGCTCGCCGACGACGAGATCATCAAGCTCTGCTCCGAGTTCCTCAACACCGGCACCGACACAACGTCCACCG
CGTTGCAGTGCATCATGGCTAAGATGGAAGGAGGTCACCGCGACGAGGTGGAGTTCGCCGAGGTGCGGGAGCAGCGGTCA
CTGGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30725.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis