Browse Element(s) Details


OsAffx.30729.1.S1_at

Description gb:NM_197588.1
DB_XREF= gi:37536535
TID=OsAffx.30729.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015I11.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g396008/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30729.1.S1_at--791--5151Chr10:20836505..20836529 (25 bp)
GCAACGTCTCGAACAAGCTGCTCGG
LOC_Os10g39600
OsAffx.30729.1.S1_at--311--1851Chr10:20836544..20836568 (25 bp)
ACGACACCGTCATGTCGCTCGACTA
LOC_Os10g39600
OsAffx.30729.1.S1_at--545--6711Chr10:20836656..20836680 (25 bp)
GTTCGAGCTGGGACGACAGGATCAT
LOC_Os10g39600
OsAffx.30729.1.S1_at--274--5771Chr10:20836726..20836750 (25 bp)
GACGTCGGTGGCAACTACGACCTGT
LOC_Os10g39600
OsAffx.30729.1.S1_at--29--4711Chr10:20836799..20836823 (25 bp)
GCGGCGATTCCGGTAGCCGGATTTA
LOC_Os10g39600
OsAffx.30729.1.S1_at--1122--9971Chr10:20836812..20836836 (25 bp)
TAGCCGGATTTACTACGTGCACGAC
LOC_Os10g39600
OsAffx.30729.1.S1_at--52--8371Chr10:20836845..20836869 (25 bp)
GGCGTACTGCTACAGCAAGCGGCAT
LOC_Os10g39600
OsAffx.30729.1.S1_at--675--3491Chr10:20836867..20836891 (25 bp)
CATGGCGAGCTGGAATGCGTGTACT
LOC_Os10g39600
OsAffx.30729.1.S1_at--592--4471Chr10:20836896..20837293 (25 bp)
GCCGGAGGGCAATCTATCACGTAAT
NONE
OsAffx.30729.1.S1_at--650--291Chr10:20837292..20837316 (25 bp)
ATAGAAACGGAGTCCACCGATGGAA
NONE
OsAffx.30729.1.S1_at--1066--20917Chr12:21523440..21523464 (25 bp)
ACAGAACTGGGTCGTTACCATATCG
NONE
Target Sequence 
GCAACGTCTCGAACAAGCTGCTCGGCACCGCCAATGGCGACGACACCGTCATGTCGCTCGACTACCTCCACCTTGTCGCG
CTGCCGAGCAAGCTGCTCGTCGTCAGGGTGCGCGTCAACAAGTCGTCGTCGGAGCCGGAGGGCTTCGACGTGTTCGAGCT
GGGACGACAGGATCATCGCGACGGCGAGGGCAAGCTCGCCTGGCGCGAGGTGGCCGGCGACGACGTCGGTGGCAACTACG
ACCTGTTCCTCGACGACCACCACGCCACCTTTGGCGGCGGCGGCGGCGGCGCCGGCGGCGATTCCGGTAGCCGGATTTAC
TACGTGCACGACGGGAAGGAGGCGTACTGCTACAGCAAGCGGCATGGCGAGCTGGAATGCGTGTACTCGGCGCCGGAGGG
CAATCTATCACGTAATAGAAACGGAGTCCACCGATGGAAGGAGTCCTACTCGGACAGAACTGGGTCGTTACCATATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis