Browse Element(s) Details


OsAffx.30743.2.S1_x_at

Description tigr:9638.m03737
TID=OsAffx.30743.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4107011/11Acyltransferase family protein
LOC_Os05g201001/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41030Os.18330.1.S2_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S1_at11/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41030Os.18330.1.S3_at10/1110+21694510..21706564Agenet domain containing protein, expressed
LOC_Os10g41040Os.14119.2.S1_x_at11/1110+21709793..21714041expressed protein
LOC_Os10g41040Os.14119.1.S1_x_at6/1110+21709793..21714041expressed protein
LOC_Os10g41050Os.46506.1.S1_at11/1110+21716848..21718761expressed protein
LOC_Os10g41060Os.46540.1.S1_at11/1110+21725326..21727262expressed protein
LOC_Os10g41070OsAffx.30743.2.S1_x_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41070OsAffx.30743.2.S1_at11/1110+21729541..21731029Acyltransferase family protein
LOC_Os10g41079NANA10+21732717..21734674hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41090OsAffx.20135.1.S1_x_at11/1110+21737039..21737656hypothetical protein
LOC_Os10g41100Os.10751.1.S1_at11/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41100Os.56275.1.S1_x_at9/1110+21739966..21742761CCT motif family protein, expressed
LOC_Os10g41110Os.27665.1.S1_at6/1110+21750525..21753511Autophagocytosis associated protein, N-terminal domain containing protein
LOC_Os10g41120Os.11299.1.S1_x_at10/1110+21754135..21757445expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30743.2.S1_x_at--402--9431Chr10:21730500..21730524 (25 bp)
TCGGGAGGCCCGTGTCCTCCGTGAC
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--562--8711Chr10:21730512..21730536 (25 bp)
TGTCCTCCGTGACCTACAGCCTGGG
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--733--3891Chr10:21730532..21730556 (25 bp)
CTGGGCCGCCTGTCGGAGCTGCTCT
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--768--1551Chr10:21730707..21730731 (25 bp)
AGCTCGCCGACGAGGTGAACCCCGT
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--938--7652Chr10:21730751..21730775 (25 bp)
GGGATGTTCTACGGCACGTCGACGT
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--720--10631Chr10:21730793..21730817 (25 bp)
TTCGACTCGGTGTTCTTCCTGATGA
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--996--3951Chr10:21730827..21730851 (25 bp)
CGGAGTACGGCGTGCACTTCTTGGA
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--1078--7331Chr10:21730838..21730862 (25 bp)
GTGCACTTCTTGGAGCCGGTGGCCA
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--732--9931Chr10:21730937..21730961 (25 bp)
TACGAGGCGACGACACTGACGAGGA
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--972--931Chr10:21730958..21730982 (25 bp)
AGGAAGGCCAAGTACTTGCTGCTTG
LOC_Os10g41070
OsAffx.30743.2.S1_x_at--348--9891Chr10:21730970..21730994 (25 bp)
TACTTGCTGCTTGCCGGCAACGAAG
LOC_Os10g41070
Target Sequence 
TCGGGAGGCCCGTGTCCTCCGTGACCTACAGCCTGGGCCGCCTGTCGGAGCTGCTCTCGCCGATCCCGCTGCTGCCGCTG
GCGCGCGAGCGCGAGGAGGACCGGCGCCGCATGGCGTCGCTGCTGTCGCGCGGCGACGTCGTGGTGTGCCCCGAGGGGAC
GACGTGCCGGGAGCCGTACCTGCTCCGGTTCAGCCCGCTGTTCGCCGAGCTCGCCGACGAGGTGAACCCCGTGGCCGTGC
GCGCCGCCGCGGGGATGTTCTACGGCACGTCGACGTCGCCGTCCGCCAAGTGCTTCGACTCGGTGTTCTTCCTGATGAAC
CCGTCGCCGGAGTACGGCGTGCACTTCTTGGAGCCGGTGGCCACGGCCGGCGCCGGCGCCGGCAGCAGCATCGAGGTGGC
GAACCGGGTGCAGAGGGTGATCGCCGGCGCGCTCGGGTACGAGGCGACGACACTGACGAGGAAGGCCAAGTACTTGCTGC
TTGCCGGCAACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30743.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis