Browse Element(s) Details


OsAffx.30828.1.S1_at

Description tigr:9639.m00465
TID=OsAffx.30828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0550011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05480Os.49126.1.S1_at10/1111+2458323..2464637Transcription factor HBP-1b, putative, expressed
LOC_Os11g05490Os.16214.1.S1_at11/1111+2472570..2473367expressed protein
LOC_Os11g05500OsAffx.30828.1.S1_at11/1111+2479882..2480121hypothetical protein
LOC_Os11g05510NANA11+2484109..2484526tuber storage protein, putative
LOC_Os11g05520Os.54903.1.S1_at2/1111+2485289..2485837Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os11g05530Os.51005.1.S1_at11/1111+2486586..2487649expressed protein
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30828.1.S1_at--69--9511Chr11:2479921..2479945 (25 bp)
TCTCCCACATCTCTAGCGGTGGCGG
LOC_Os11g05500
OsAffx.30828.1.S1_at--499--3711Chr11:2479933..2479957 (25 bp)
CTAGCGGTGGCGGAACCTCATCGTA
LOC_Os11g05500
OsAffx.30828.1.S1_at--1128--9991Chr11:2479934..2479958 (25 bp)
TAGCGGTGGCGGAACCTCATCGTAT
LOC_Os11g05500
OsAffx.30828.1.S1_at--1134--1611Chr11:2479935..2479959 (25 bp)
AGCGGTGGCGGAACCTCATCGTATC
LOC_Os11g05500
OsAffx.30828.1.S1_at--821--4671Chr11:2479936..2479960 (25 bp)
GCGGTGGCGGAACCTCATCGTATCC
LOC_Os11g05500
OsAffx.30828.1.S1_at--926--7711Chr11:2479938..2479962 (25 bp)
GGTGGCGGAACCTCATCGTATCCTC
LOC_Os11g05500
OsAffx.30828.1.S1_at--139--8471Chr11:2479940..2479964 (25 bp)
TGGCGGAACCTCATCGTATCCTCCT
LOC_Os11g05500
OsAffx.30828.1.S1_at--220--3551Chr11:2479951..2479975 (25 bp)
CATCGTATCCTCCTCGCCGTTGTTG
LOC_Os11g05500
OsAffx.30828.1.S1_at--143--4511Chr11:2479966..2479990 (25 bp)
GCCGTTGTTGCCGACGTCAATACGC
LOC_Os11g05500
OsAffx.30828.1.S1_at--646--6631Chr11:2479969..2479993 (25 bp)
GTTGTTGCCGACGTCAATACGCCCT
LOC_Os11g05500
OsAffx.30828.1.S1_at--906--10791Chr11:2479970..2479994 (25 bp)
TTGTTGCCGACGTCAATACGCCCTC
LOC_Os11g05500
Target Sequence 
TCTCCCACATCTCTAGCGGTGGCGGAACCTCATCGTATCCTCCTCGCCGTTGTTGCCGACGTCAATACGCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis