Browse Element(s) Details


OsAffx.30850.1.S1_at

Description tigr:9639.m00629
TID=OsAffx.30850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0694011/11hypothetical protein
LOC_Os05g235101/11retrotransposon protein, putative, unclassified
LOC_Os08g010101/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06930OsAffx.30849.1.S1_at11/1111+3414707..3419882CBS domain-containing protein, putative, expressed
LOC_Os11g06940OsAffx.30850.1.S1_at11/1111+3436849..3437722hypothetical protein
LOC_Os11g06950NANA11+3439205..3439564hypothetical protein
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30850.1.S1_at--531--5391Chr11:3437624..3437648 (25 bp)
GAAGCAGACCATGGCCTGGGAAGCA
LOC_Os11g06940
OsAffx.30850.1.S1_at--51--6011Chr11:3437517..3437540 (24 bp)
GAGAGTTCCTCCTGTTGATCCTGAA
LOC_Os11g06940
OsAffx.30850.1.S1_at--1133--8692Chr11:3437502..3437526 (25 bp)
TGATCCTGAACTTTTACGGCCTTTC
LOC_Os11g06940
OsAffx.30850.1.S1_at--193--6091Chr11:3437406..3437430 (25 bp)
GAGTAGTGCCTTTTCTTGACAGTCA
LOC_Os11g06940
OsAffx.30850.1.S1_at--1058--7091Chr11:3437378..3437402 (25 bp)
GTCACCTAGCGCAACAATGCATGCA
LOC_Os11g06940
OsAffx.30850.1.S1_at--182--4972Chr11:3437356..3437380 (25 bp)
GCATACATGTCTTTACTAGCCGTGA
LOC_Os11g06940
OsAffx.30850.1.S1_at--1046--1671Chr11:3437339..3437363 (25 bp)
AGCCGTGATTGTACCTAGTGTGTTG
LOC_Os11g06940
OsAffx.30850.1.S1_at--92--7531Chr11:3436989..3437013 (25 bp)
GTGGAATATATCCTCGAGCCAATAT
LOC_Os11g06940
OsAffx.30850.1.S1_at--947--6893Chr07:29682686..29682796 (25 bp)
GTATCATCTGATACCCTCGAGGTAT
NONE
OsAffx.30850.1.S1_at--836--6891Chr11:3436918..3436942 (25 bp)
GTATCATCCGATCCTCTCAAAGTAT
LOC_Os11g06940
OsAffx.30850.1.S1_at--398--2331Chr11:3436900..3436924 (25 bp)
AAAGTATCACCACGGTACCCTCGAG
LOC_Os11g06940
Target Sequence 
GAAGCAGACCATGGCCTGGGAAGCAGGAGAGTTCCTCCTGTTGATCCTGAACTTTTACGGCCTTTCTCTCTTGCACCTCA
ACCCCAACTCCTTCGCCTTCCTTACCATCTTTGCTCACCTCTGCGAGGCCTACATCAGAGTAGTGCCTTTTCTTGACAGT
CACCTGTCACCTAGCGCAACAATGCATGCATACATGTCTTTACTAGCCGTGATTGTACCTAGTGTGTTGGTTGGGCTTGT
GTACATGATCAGTATTTCGAGGTACGATGTGGAATATATCCTCGAGCCAATATTTATGATACATCTGGTACCCACAAAGT
ATCATCTGATACCCTCGAGGTATCATCCGATCCTCTCAAAGTATCACCACGGTACCCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis