Browse Element(s) Details


Os.27795.1.S1_at

Description gb:AK067523.1
DB_XREF= gi:32977541
TID=Os.27795.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107B22, full insert sequence.
FL= gb:AK067523.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0698011/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06940OsAffx.30850.1.S1_at11/1111+3436849..3437722hypothetical protein
LOC_Os11g06950NANA11+3439205..3439564hypothetical protein
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27795.1.S1_at--306--9351Chr11:3460388..3460412 (25 bp)
TCGCTGGCGCAGGACTACACGGTGA
LOC_Os11g06980
Os.27795.1.S1_at--404--3211Chr11:3460254..3460278 (25 bp)
CAAGGCCTCATTGGTCGGCAAAGAT
LOC_Os11g06980
Os.27795.1.S1_at--188--731Chr11:3460066..3460090 (25 bp)
ATGTATGCCATATAGTACCTACTTC
LOC_Os11g06980
Os.27795.1.S1_at--659--9971Chr11:3460051..3460075 (25 bp)
TACCTACTTCATCGTACTGTACTGC
LOC_Os11g06980
Os.27795.1.S1_at--777--9911Chr11:3460032..3460056 (25 bp)
TACTGCGTACGCATGCTGCCAGCTG
LOC_Os11g06980
Os.27795.1.S1_at--463--10731Chr11:3460005..3460029 (25 bp)
TTGCATACCTTGCTGCTGGAGATAT
LOC_Os11g06980
Os.27795.1.S1_at--34--591Chr11:3459971..3459995 (25 bp)
ATCCAGCACTTATATACTCGTCACT
LOC_Os11g06980
Os.27795.1.S1_at--187--2011Chr11:3459956..3459980 (25 bp)
ACTCGTCACTTCTATCGTGTGTCGA
LOC_Os11g06980
Os.27795.1.S1_at--117--6851Chr11:3459877..3459901 (25 bp)
GTTTCGTGATATGTTGCTTCATCCA
LOC_Os11g06980
Os.27795.1.S1_at--799--6671Chr11:3459865..3459889 (25 bp)
GTTGCTTCATCCATATGGACCATAT
LOC_Os11g06980
Os.27795.1.S1_at--600--271Chr11:3459844..3459868 (25 bp)
ATATGTACCACCAATCCCAGTGATA
LOC_Os11g06980
Target Sequence 
TCGCTGGCGCAGGACTACACGGTGAGCGGCGTGAGGCGAATGGCCGGAACCGGCCAGCTCATCGCTTGCCATCCGGAGTC
GTACCCGTACGCTGTGTTCATGTGCCACCTCACAGAGGCGACGACGAGGGCGTACAAGGCCTCATTGGTCGGCAAAGATG
GTACTGCGGTGGAGGCGGTCGCCGTGTGCCACACCGACACGTCGGACTGGAACCCAGAGCACGCTGCCTTCCATGTGCTC
GGCGTCAAGCCTGGGACTGTGCCTGTCTGCCACTTCATGCAGCCTGACGCTGTCGTCTGGACCCGCAGGGGCTGATGTAT
GTATGTATGCCATATAGTACCTACTTCATCGTACTGTACTGCGTACGCATGCTGCCAGCTGCTTTGCATACCTTGCTGCT
GGAGATATATAATTAATATCCAGCACTTATATACTCGTCACTTCTATCGTGTGTCGAAGGTTATATACTTGTAGCATTTG
GGGATGCAGTACGTACGTGTGTCTGTAATAAGTTTCGTGATATGTTGCTTCATCCATATGGACCATATGTACCACCAATC
CCAGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis