Browse Element(s) Details


OsAffx.30851.1.S1_at

Description tigr:9639.m00635
TID=OsAffx.30851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0700011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30851.1.S1_at--366--6631Chr11:3479209..3479233 (25 bp)
GTTGTGGACGCCATCCTAGATGACA
LOC_Os11g07000
OsAffx.30851.1.S1_at--6--10731Chr11:3479347..3479371 (25 bp)
TTGCTGCTATCGCTTCTGATGACAG
LOC_Os11g07000
OsAffx.30851.1.S1_at--836--291Chr11:3479382..3479406 (25 bp)
ATACCTGGCCTACGCAGTGCATGAT
LOC_Os11g07000
OsAffx.30851.1.S1_at--355--6451Chr11:3479454..3479478 (25 bp)
GATCAGCCATGGAGTGTTCGTCACC
LOC_Os11g07000
OsAffx.30851.1.S1_at--537--4971Chr11:3479483..3479507 (25 bp)
GCATCATCGCCATACTTGTCATTAG
LOC_Os11g07000
OsAffx.30851.1.S1_at--1125--8631Chr11:3479515..3479539 (25 bp)
TGGGAGATTATCGTGCACGTCTTCT
LOC_Os11g07000
OsAffx.30851.1.S1_at--1113--1891Chr11:3479531..3479555 (25 bp)
ACGTCTTCTCGCAGTGGACCAATGT
LOC_Os11g07000
OsAffx.30851.1.S1_at--168--4851Chr11:3479570..3479594 (25 bp)
GCTACATCAGGTTGCGAGGACGTCA
LOC_Os11g07000
OsAffx.30851.1.S1_at--536--991Chr11:3479644..3479668 (25 bp)
AGGATCATGTTCTGGCTCATCGGGA
LOC_Os11g07000
OsAffx.30851.1.S1_at--304--7631Chr11:3479684..3479708 (25 bp)
GGGACCGCAATATTCGCCAGTGCAA
LOC_Os11g07000
OsAffx.30851.1.S1_at--819--5151Chr11:3479705..3479729 (25 bp)
GCAACCTAGTGATGTCGGCTCGGAC
LOC_Os11g07000
Target Sequence 
GTTGTGGACGCCATCCTAGATGACAAGAAGGGCTACGAGAGGGCGTTCCGTGTGACGGAGGTAGAGCTGTCCTTCCTCCA
GGACTTCTTCTACAGCAAGCACGCTGATGTCTTCGCCAGTGGCTTCCCTTGCGTGAGGTTGCTGCTATCGCTTCTGATGA
CAGCAGCTGCCTCATACCTGGCCTACGCAGTGCATGATATGCCTAGTGTTAGCACAGGCCTCACTGCCAAGGGCCGCCTC
GCTAGGATCAGCCATGGAGTGTTCGTCACCCACTGCATCATCGCCATACTTGTCATTAGAGAGCTCTGGGAGATTATCGT
GCACGTCTTCTCGCAGTGGACCAATGTCTTGATCATCTGCAGCTACATCAGGTTGCGAGGACGTCAAGGCTGCTGGATCC
AGGGGCTGCGGCTTTGGATGATGGAGAAGGTGGCGAGGATCATGTTCTGGCTCATCGGGAGGGGACGAAGCCGACGGGAC
CGCAATATTCGCCAGTGCAACCTAGTGATGTCGGCTCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis