Browse Element(s) Details


OsAffx.9335.2.S1_at

Description tigr:9639.m00634
TID=OsAffx.9335.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0699011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9335.2.S1_at--820--6011Chr11:3471066..3471090 (25 bp)
GAGAGTTCAGAAGAGCTCAAGACAA
LOC_Os11g06990
OsAffx.9335.2.S1_at--876--331Chr11:3470999..3471023 (25 bp)
ATACAGCAAAGCAATCACATGGTGA
LOC_Os11g06990
OsAffx.9335.2.S1_at--673--7371Chr11:3470712..3470736 (25 bp)
GTGATCGAAGTCAACCTCGGTCAAT
LOC_Os11g06990
OsAffx.9335.2.S1_at--138--9292Chr11:3470650..3470674 (25 bp)
TCCGGCACGGTCAAGAGGCCATGTG
LOC_Os11g06990
OsAffx.9335.2.S1_at--964--6211Chr11:3470275..3470660 (25 bp)
GAGGCCATGTGACAAGTGCATGCAT
LOC_Os11g06990
OsAffx.9335.2.S1_at--926--7651Chr11:3469998..3470022 (25 bp)
GGAGATCGACTACATGCGGGACCCA
LOC_Os11g06990
OsAffx.9335.2.S1_at--519--9131Chr11:3469984..3470008 (25 bp)
TGCGGGACCCATGCCAAATTCAGAT
LOC_Os11g06990
OsAffx.9335.2.S1_at--705--4371Chr11:3469971..3469995 (25 bp)
CCAAATTCAGATGGCGTGCGCGGGA
LOC_Os11g06990
OsAffx.9335.2.S1_at--719--5951Chr11:3468958..3468982 (25 bp)
GAGCAAGCTGGATCTAGTTCAACTA
LOC_Os11g06990
OsAffx.9335.2.S1_at--1108--4711Chr11:3468952..3468976 (25 bp)
GCTGGATCTAGTTCAACTACTGCCT
LOC_Os11g06990
OsAffx.9335.2.S1_at--749--4431Chr11:3468931..3468955 (25 bp)
GCCTTCCCGTGCCTGGAAACTGGAA
LOC_Os11g06990
Target Sequence 
GAGAGTTCAGAAGAGCTCAAGACAAGAAGCTTTAGGAGGGGAAAGGAGAGCAGAAATGGTCCAAAAGATACAGCAAAGCA
ATCACATGGTGATCGAAGTCAACCTCGGTCAATGGCGAGGACCGGGACTATGCTCAGGGAGGAGCATAGGTCCGGCACGG
TCAAGAGGCCATGTGACAAGTGCATGCATGGACAAGGTGATGTGCATGTGTGTTGTGATTGGTTGGTAGGGAGGCCACCA
ATCCATCGTGATCATGGGCTCGGCCAGGATGCCACACGGCTGGACCGGACTGGCCCAGTCCAAGATGGAGCAGAGGCCAG
CATGATCCAAGCAACGACGGCCCAGCTCGGCAAGCAAGGGCGTCAAGGCAGGAGGTCTCGGCGACGACGCGCGCGTGAGG
GACACGCGGCAGGCGCGGACTCGACTGCGCGCTCTCGCGCGGGAGATCGACTACATGCGGGACCCATGCCAAATTCAGAT
GGCGTGCGCGGGAGGAGAAGAATTTACAAGAGCAAGCTGGATCTAGTTCAACTACTGCCTTCCCGTGCCTGGAAACTGGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9335.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis