Browse Element(s) Details


Os.46020.1.S1_at

Description gb:AK066991.1
DB_XREF= gi:32977009
TID=Os.46020.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090M19, full insert sequence.
FL= gb:AK066991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g069901/11expressed protein
LOC_Os08g307101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46020.1.S1_at--1048--10178Chr08:18769036..18769057 (22 bp)
TATAGCCGTTCTTGGTCTTTCAGTC
NONE
Os.46020.1.S1_at--933--4031Chr07:1147531..1147555 (25 bp)
CGTTCTTGGTCTTTCAGTCTTAATA
NONE
Os.46020.1.S1_at--369--7811Chr07:1147538..1147562 (25 bp)
GGTCTTTCAGTCTTAATAACAAAAT
NONE
Os.46020.1.S1_at--944--2031Chr07:1147565..1147589 (25 bp)
ACTATTGGTCAGTCAAAGAGGGCAT
NONE
Os.46020.1.S1_at--643--7091Chr07:1147576..1147600 (25 bp)
GTCAAAGAGGGCATAATCAACTGGA
NONE
Os.46020.1.S1_at--566--9691Chr07:1147592..1147616 (25 bp)
TCAACTGGAGAATAAGGCTTACCTA
NONE
Os.46020.1.S1_at--176--351Chr07:1147603..1147627 (25 bp)
ATAAGGCTTACCTAACGTCCACATC
NONE
Os.46020.1.S1_at--62--10471Chr07:1147610..1147634 (25 bp)
TTACCTAACGTCCACATCTTTGATT
NONE
Os.46020.1.S1_at--827--7271Chr07:1147619..1147643 (25 bp)
GTCCACATCTTTGATTTACTTGAGT
NONE
Os.46020.1.S1_at--884--951Chr07:1147655..1147679 (25 bp)
AGGACATGGACCTTTATGCTCACCG
NONE
Os.46020.1.S1_at--615--3471Chr07:1147659..1147683 (25 bp)
CATGGACCTTTATGCTCACCGTTCA
NONE
Target Sequence 
TATAGCCGTTCTTGGTCTTTCAGTCTTAATAACAAAATTTACTATTGGTCAGTCAAAGAGGGCATAATCAACTGGAGAAT
AAGGCTTACCTAACGTCCACATCTTTGATTTACTTGAGTTTTCTCCACCAAGGACATGGACCTTTATGCTCACCGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis