Browse Element(s) Details


Os.5879.1.S1_at

Description gb:AY144497.1
DB_XREF= gi:34147318
TID=Os.5879.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5879 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsCDPK protein mRNA, complete cds.
PROD=OsCDPK protein
FL= gb:AY144497.1 gb:AK102308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0704011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed
LOC_Os11g07070OsAffx.18715.1.S1_at11/1111+3519331..3520063hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5879.1.S1_at--939--6891Chr11:3491829..3491853 (25 bp)
GTATCAGCATTCTCATTTTTCGACA
LOC_Os11g07040
Os.5879.1.S1_at--607--691Chr11:3491777..3491801 (25 bp)
ATGAGCTGTCACAAGCATGCCGCGA
LOC_Os11g07040
Os.5879.1.S1_at--790--2711Chr11:3491765..3491789 (25 bp)
AAGCATGCCGCGAATTTGGCCTTGA
LOC_Os11g07040
Os.5879.1.S1_at--195--10871Chr11:3491750..3491774 (25 bp)
TTGGCCTTGATGATCTTCACCTTGA
LOC_Os11g07040
Os.5879.1.S1_at--514--2151Chr11:3491526..3491550 (25 bp)
ACAGCTTGCAGTTGAATCTTGGTGA
LOC_Os11g07040
Os.5879.1.S1_at--262--7391Chr11:3491505..3491529 (25 bp)
GTGAGATCTTGAACCCCAGCAACAG
LOC_Os11g07040
Os.5879.1.S1_at--517--5151Chr11:3491487..3491511 (25 bp)
GCAACAGCTAAACTCCTACAGGAAG
LOC_Os11g07040
Os.5879.1.S1_at--517--5291Chr11:3491466..3491490 (25 bp)
GAAGGCCATGGCTGTTACATGCCAT
LOC_Os11g07040
Os.5879.1.S1_at--1094--4411Chr11:3491446..3491470 (25 bp)
GCCATCATTGTCTGAATCTCTGCAC
LOC_Os11g07040
Os.5879.1.S1_at--91--6111Chr11:3491380..3491404 (25 bp)
GAGTGAATTGTGCTTTGGCGTTACA
LOC_Os11g07040
Os.5879.1.S1_at--807--4891Chr11:3491220..3491244 (25 bp)
GCTTATATGTATTCCTGTCCTTGTA
LOC_Os11g07040
Target Sequence 
GTATCAGCATTCTCATTTTTCGACAAAGATGGAAGTGGTTTCATAACTATTGATGAGCTGTCACAAGCATGCCGCGAATT
TGGCCTTGATGATCTTCACCTTGAGGATATGATTAAAGATGTTGATCAAAACAATGACGGACAAATTGACTACAGCGAGT
TCACNGCGATGATGAGAAAGGGCAATGCTGGTGGAGCTGGAAGGAGAACCATGAGGAACAGCTTGCAGTTGAATCTTGGT
GAGATCTTGAACCCCAGCAACAGCTAAACTCCTACAGGAAGGCCATGGCTGTTACATGCCATCATTGTCTGAATCTCTGC
ACGCCTCATCAGCTGGACTAATCTCTAAGAGGGCAAAGCCGTTGAGTGAATTGTGCTTTGGCGTTACATGAGACGCTGAA
GAATTTTCGTAGCAGTAATAGCTACAGCTACTAGAGTGTAAGAGAAATTGGCGTTATGTGATCGTAATATCCTATCAGTG
TAACTGATCTTAGATGATGCTGGAGATGATAGTACAATGAACAGCTTATATGTATTCCTGTCCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis