Browse Element(s) Details


OsAffx.30849.1.S1_at

Description tigr:9639.m00628
TID=OsAffx.30849.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CBS domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0693011/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06910Os.9349.1.S1_at10/1111+3385190..3391826coiled-coil protein, putative, expressed
LOC_Os11g06920OsAffx.22848.4.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06920OsAffx.22848.3.S1_x_at1/1111+3397842..3404144retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06930OsAffx.30849.1.S1_at11/1111+3414707..3419882CBS domain-containing protein, putative, expressed
LOC_Os11g06940OsAffx.30850.1.S1_at11/1111+3436849..3437722hypothetical protein
LOC_Os11g06950NANA11+3439205..3439564hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30849.1.S1_at--6--2332Chr11:3416286..3416310 (25 bp)
AAAGTTTTGGGACTCAGCTCTTGCT
LOC_Os11g06930
OsAffx.30849.1.S1_at--479--7231Chr11:3416154..3416174 (21 bp)
GTCGCAGTGAAATATCTTTGCTCAT
LOC_Os11g06930
OsAffx.30849.1.S1_at--1048--10271Chr11:3416138..3416162 (25 bp)
TTTGCTCATGCCATCAGAGGCTGGA
LOC_Os11g06930
OsAffx.30849.1.S1_at--466--1191Chr11:3416104..3416128 (25 bp)
AGTAGCATTAATCCTCCTGTTGTTG
LOC_Os11g06930
OsAffx.30849.1.S1_at--275--4291Chr11:3416092..3416116 (25 bp)
CCTCCTGTTGTTGGCAATTCATTTG
LOC_Os11g06930
OsAffx.30849.1.S1_at--876--5891Chr11:3415922..3415946 (25 bp)
GAGCTGGTGTCTTCTGTGGTGCAAA
LOC_Os11g06930
OsAffx.30849.1.S1_at--726--7751Chr11:3415393..3415417 (25 bp)
GGTGTTGCTCACTACGGATACTGAT
LOC_Os11g06930
OsAffx.30849.1.S1_at--712--4731Chr11:3415359..3415383 (25 bp)
GCTGTGCTCCATGCTAAATCTTCTG
LOC_Os11g06930
OsAffx.30849.1.S1_at--140--6311Chr11:3415193..3415217 (25 bp)
GATGAGTCAAATTCCAGTTCTGAGG
LOC_Os11g06930
OsAffx.30849.1.S1_at--497--1351Chr11:3415089..3415113 (25 bp)
AGAGTTGACATCTTCACACACAAGT
LOC_Os11g06930
OsAffx.30849.1.S1_at--1022--2211Chr11:3415070..3415094 (25 bp)
ACAAGTCAGTTGACCCCTGCTCATT
LOC_Os11g06930
Target Sequence 
AAAGTTTTGGGACTCAGCTCTTGCTTTGGAGCCCCCAGATGAGGAATTTGATAGTCGCAGTGAAATATCTTTGCTCATGC
CATCAGAGGCTGGAGATGGCAGGAGTAGCATTAATCCTCCTGTTGTTGGCAATTCATTTGTCTTTAAGATTGAGGACCAG
AAGGGACGTATGCATAGATTTGCATGTGGTTCAGAGAGTTTACATGAGCTGGTGTCTTCTGTGGTGCAAAGATTAGGCAT
TGATGGCGAAAAGGGCACAGTTCAACTTTTGTATGATGATGATGAAGGTGATAGGGTGTTGCTCACTACGGATACTGATC
TTACCGGGGCTGTGCTCCATGCTAAATCTTCTGGATTGAAGTCATTGAGGTTGTACACTGATGAGTCAAATTCCAGTTCT
GAGGTGACAAAACACAGTTCTGAAGTAACAAAGCACGCTTCTGAAGTGACAAAGCACACTTCTGAAGTGACAAAGCAACC
TCCAGAGTTGACATCTTCACACACAAGTCAGTTGACCCCTGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis